Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   HKM25_RS08465 Genome accession   NZ_CP053210
Coordinates   1658880..1660895 (-) Length   671 a.a.
NCBI ID   WP_001048760.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 6A-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653880..1665895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKM25_RS08450 (HKM25_1727) - 1656324..1656551 (-) 228 WP_000576349.1 hypothetical protein -
  HKM25_RS08455 - 1656949..1657227 (+) 279 WP_170835806.1 hypothetical protein -
  HKM25_RS08460 (HKM25_1729) - 1657583..1658563 (-) 981 WP_000795116.1 acetylxylan esterase -
  HKM25_RS08465 (HKM25_1730) recG/mmsA 1658880..1660895 (-) 2016 WP_001048760.1 ATP-dependent DNA helicase RecG Machinery gene
  HKM25_RS08470 (HKM25_1731) alr 1660914..1662017 (-) 1104 WP_000648076.1 alanine racemase -
  HKM25_RS08475 (HKM25_1732) acpS 1662007..1662369 (-) 363 WP_000635008.1 holo-ACP synthase -
  HKM25_RS08480 (HKM25_1733) - 1662414..1663445 (-) 1032 WP_000864060.1 3-deoxy-7-phosphoheptulonate synthase -
  HKM25_RS08485 (HKM25_1734) - 1663447..1664478 (-) 1032 WP_000232209.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75247.79 Da        Isoelectric Point: 5.9460

>NTDB_id=390432 HKM25_RS08465 WP_001048760.1 1658880..1660895(-) (recG/mmsA) [Streptococcus pneumoniae strain 6A-10]
MNLHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVLELEDGEKAVLSGQVVTPASVQYYGFKRNRLR
FSLKQGEVVFAVNFFNQPYLADKIELGATLAVFGKWDRAKASLTGMKVLAQVEDDLQPVYRLAQGISQASLVKVIKTAFD
QGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKDLAEYKQALRRIKFEELFYFQMQLQTLKSENRVQGSGLVLDWSQE
KVTAVKASLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFES
LQNLFPNLKLALLTGSLKAAEKREVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQAYVISPLIEESEALDLKN
AIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTDSGKDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARK
VASYISSIEAWQEDPEWRMIALHLEKKEHLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=390432 HKM25_RS08465 WP_001048760.1 1658880..1660895(-) (recG/mmsA) [Streptococcus pneumoniae strain 6A-10]
ATGAATCTACATCAACCCTTGCATGTCTTGCCTGGTGTGGGACCAAAGTCAGCAGAAAAATACGCCAAACTAGGAATTGA
AAACTTGCAAGATCTCTTGCTCTACTTTCCTTTCCGTTATGAAGACTTCAAAACCAAGCAGGTGCTGGAGCTGGAAGACG
GTGAGAAGGCAGTTCTTTCTGGTCAGGTAGTGACTCCTGCTAGTGTCCAGTATTATGGTTTCAAGCGCAATCGCCTGCGT
TTTAGTCTCAAGCAGGGAGAGGTCGTTTTTGCGGTGAATTTCTTTAACCAGCCCTATCTGGCTGATAAAATAGAGTTGGG
AGCAACCCTTGCTGTCTTTGGAAAATGGGACCGCGCTAAGGCTAGTCTGACTGGGATGAAGGTTCTGGCTCAGGTAGAAG
ATGACCTCCAGCCTGTCTATCGTCTGGCTCAGGGAATCAGTCAGGCCAGTCTGGTCAAGGTCATCAAGACGGCTTTTGAT
CAGGGACTGGACCTCTTGATAGAAGAAAATCTGCCCCAGTCTTTACTAGACAAATACAAACTCATGTCCCGTTGTCAGGC
AGTCCGAGCTATGCATTTTCCAAAGGATTTGGCAGAATACAAGCAGGCTCTTCGCCGTATCAAGTTTGAGGAACTCTTTT
ATTTCCAAATGCAGCTGCAGACGCTCAAGTCTGAAAATAGAGTTCAGGGAAGTGGTCTGGTTCTGGATTGGTCTCAGGAA
AAAGTGACAGCAGTTAAAGCAAGTCTTCCTTTTGCCCTGACCCAAGCTCAGGAAAAGAGTTTGCAGGAAATTTTAACTGA
TATGAAGTCCGACCACCACATGAATCGTCTCCTACAAGGAGATGTGGGGAGCGGAAAAACGGTAGTCGCTGGCTTGGCCA
TGTTTGCGGCAGTGACAGCAGGTTATCAGGCTGCCCTAATGGTACCAACAGAAATCCTCGCAGAGCAACACTTTGAGAGT
TTACAGAACCTTTTTCCCAATTTGAAACTGGCTCTCTTGACAGGTTCCTTGAAAGCTGCAGAAAAGAGAGAAGTCTTGGA
GACCATTGCCAAGGGTGAGGCTGATTTGATTATAGGAACTCACGCTCTGATACAAGATGGGGTGGAGTATGCTCGTCTTG
GTTTGATTATTATCGATGAGCAGCACCGTTTTGGTGTAGGGCAAAGGCGTATTTTACGGGAAAAAGGTGACAATCCAGAT
GTCCTCATGATGACGGCGACTCCCATTCCACGGACGCTTGCCATCACAGCCTTTGGAGATATGGATGTTTCCATTATCGA
CCAGATGCCAGCAGGTCGGAAGCCTATTGTGACGCGCTGGATCAAACATGAGCAACTACCTCAGGTCTTGACTTGGTTAG
AGGGGGAAATTCAAAAAGGTTCCCAAGCCTATGTCATCTCTCCTTTGATTGAAGAATCAGAAGCTCTAGATTTGAAAAAT
GCCATTGCCTTATCAGAGGAGTTGACGACTCATTTTGCAGGCAAGGCAGAGGTGGCTCTTCTACATGGTAGGATGAAGAG
TGACGAAAAAGACCAGATCATGCAGGATTTCAAGGAGAGAAAGACGGATATTCTGGTTTCGACGACGGTTATTGAGGTTG
GGGTCAACGTTCCCAATGCGACTGTCATGATTATCATGGATGCCGATCGCTTCGGTCTCAGTCAACTTCACCAGCTTAGA
GGTCGTGTCGGTCGGGGGGACAAGCAGTCCTACGCTGTTCTCGTTGCCAATCCCAAGACGGATTCTGGGAAAGACCGCAT
GCGCATCATGACAGAAACGACCAATGGATTTGTCCTTGCGGAGGAAGATTTGAAAATGCGTGGTTCTGGTGAGATTTTTG
GAACCAGACAGTCAGGACTTCCAGAGTTCCAAGTGGCTGATATTATCGAAGATTTTCCGATTTTAGAAGAAGCAAGAAAG
GTTGCTAGCTACATTAGTTCTATAGAAGCTTGGCAAGAAGATCCAGAGTGGCGCATGATTGCCCTTCATCTGGAAAAGAA
AGAACATCTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(456-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-665)

RecG wedge domain (RecG_wedge)

(11-158)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

99.702

100

0.997
  recG/mmsA Streptococcus pneumoniae R36A

99.702

100

0.997
  recG Bacillus subtilis subsp. subtilis str. 168

49.115

100

0.496
  recG Neisseria meningitidis strain C311

38.872

100

0.39