Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   FSA28_RS02075 Genome accession   NZ_CP044495
Coordinates   417389..418423 (+) Length   344 a.a.
NCBI ID   WP_002291637.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 412389..423423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS02050 (FSA28_0193) tsaE 413730..414173 (+) 444 WP_002291643.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FSA28_RS02055 (FSA28_0194) brpA 414504..415724 (+) 1221 WP_002267779.1 biofilm formation/cell division transcriptional regulator BrpA -
  FSA28_RS02060 (FSA28_0195) - 415887..416180 (-) 294 WP_002265649.1 hypothetical protein -
  FSA28_RS02065 (FSA28_0196) - 416177..416596 (-) 420 WP_002291642.1 HIT family protein -
  FSA28_RS02070 (FSA28_0197) pptA 416661..417386 (+) 726 WP_002291641.1 ABC transporter ATP-binding protein Regulator
  FSA28_RS02075 (FSA28_0198) pptB 417389..418423 (+) 1035 WP_002291637.1 ABC transporter permease Regulator
  FSA28_RS02080 (FSA28_0199) ccrZ 418482..419264 (+) 783 WP_002262606.1 cell cycle regulator CcrZ -
  FSA28_RS02085 (FSA28_0200) trmB 419274..419909 (+) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FSA28_RS02095 (FSA28_0202) rimP 420181..420672 (+) 492 WP_002267543.1 ribosome maturation factor RimP -
  FSA28_RS02100 (FSA28_0203) nusA 420708..421901 (+) 1194 WP_002262603.1 transcription termination factor NusA -
  FSA28_RS02105 (FSA28_0204) - 421919..422215 (+) 297 WP_002263922.1 YlxR family protein -
  FSA28_RS02110 (FSA28_0205) - 422208..422510 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40554.99 Da        Isoelectric Point: 10.5992

>NTDB_id=390422 FSA28_RS02075 WP_002291637.1 417389..418423(+) (pptB) [Streptococcus mutans strain UA140]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLALVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTTLLPKETHKAWTNLYLRAFLRSGDYLGLIFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKKANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=390422 FSA28_RS02075 WP_002291637.1 417389..418423(+) (pptB) [Streptococcus mutans strain UA140]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGTCAGCTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGCGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAGGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAGGGATTAATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAACGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAACATTATTGCCGAAGGAGACTCATAAAG
CGTGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGATCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGAAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.163

100

0.512

  pptB Streptococcus thermophilus LMD-9

50.581

100

0.506


Multiple sequence alignment