Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   FSA40_RS02015 Genome accession   NZ_CP044493
Coordinates   374073..375107 (+) Length   344 a.a.
NCBI ID   WP_002268775.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 369073..380107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS01990 (FSA40_0393) tsaE 370407..370850 (+) 444 WP_002291643.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  FSA40_RS01995 (FSA40_0394) brpA 371181..372401 (+) 1221 WP_002262611.1 biofilm formation/cell division transcriptional regulator BrpA -
  FSA40_RS02000 (FSA40_0395) - 372571..372864 (-) 294 WP_002268777.1 hypothetical protein -
  FSA40_RS02005 (FSA40_0396) - 372861..373280 (-) 420 WP_002262609.1 HIT family protein -
  FSA40_RS02010 (FSA40_0397) pptA 373345..374070 (+) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  FSA40_RS02015 (FSA40_0398) pptB 374073..375107 (+) 1035 WP_002268775.1 ABC transporter permease Regulator
  FSA40_RS02020 (FSA40_0399) ccrZ 375166..375948 (+) 783 WP_002265159.1 cell cycle regulator CcrZ -
  FSA40_RS02025 (FSA40_0400) trmB 375958..376593 (+) 636 WP_002265651.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  FSA40_RS02035 (FSA40_0402) rimP 376865..377356 (+) 492 WP_002262604.1 ribosome maturation factor RimP -
  FSA40_RS02040 (FSA40_0403) nusA 377392..378585 (+) 1194 WP_002265156.1 transcription termination factor NusA -
  FSA40_RS02045 (FSA40_0404) - 378603..378899 (+) 297 WP_002263922.1 YlxR family protein -
  FSA40_RS02050 (FSA40_0405) - 378892..379194 (+) 303 WP_002262601.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40598.06 Da        Isoelectric Point: 10.6270

>NTDB_id=390352 FSA40_RS02015 WP_002268775.1 374073..375107(+) (pptB) [Streptococcus mutans strain MD]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRALFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKKTHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPISKAEKEANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=390352 FSA40_RS02015 WP_002268775.1 374073..375107(+) (pptB) [Streptococcus mutans strain MD]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGCCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAGCTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAAGGATTGATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAGCGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGAAGACTCATAAAG
CATGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGT
CTTTTAAGTCTTCTTTTTATTGACAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCATTTCAAAAGCGGAGAAGGAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515

  pptB Streptococcus thermophilus LMD-9

50.872

100

0.509


Multiple sequence alignment