Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   FSA31_RS05330 Genome accession   NZ_CP044492
Coordinates   1086988..1087677 (-) Length   229 a.a.
NCBI ID   WP_002284422.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081988..1092677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS05300 (FSA31_1049) - 1082262..1083020 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  FSA31_RS05305 (FSA31_1050) - 1083010..1083288 (-) 279 WP_002265496.1 UPF0223 family protein -
  FSA31_RS05310 (FSA31_1051) spx 1083281..1083694 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  FSA31_RS05315 (FSA31_1052) - 1083755..1084675 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  FSA31_RS05320 (FSA31_1053) truB 1084706..1085587 (-) 882 WP_002284421.1 tRNA pseudouridine(55) synthase TruB -
  FSA31_RS05325 (FSA31_1054) scnK 1085680..1086987 (-) 1308 WP_002270206.1 HAMP domain-containing sensor histidine kinase Regulator
  FSA31_RS05330 (FSA31_1055) scnR 1086988..1087677 (-) 690 WP_002284422.1 response regulator transcription factor Regulator
  FSA31_RS05340 (FSA31_1056) - 1087852..1088760 (+) 909 WP_002262197.1 ABC transporter ATP-binding protein -
  FSA31_RS05345 (FSA31_1057) - 1088760..1089500 (+) 741 WP_002265501.1 ABC transporter permease -
  FSA31_RS05350 (FSA31_1058) - 1089497..1090225 (+) 729 WP_002284423.1 ABC transporter permease -
  FSA31_RS05355 (FSA31_1059) - 1090352..1091713 (-) 1362 WP_172964906.1 DUF438 domain-containing protein -
  FSA31_RS05360 (FSA31_1060) - 1091713..1091946 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26292.67 Da        Isoelectric Point: 6.9650

>NTDB_id=390300 FSA31_RS05330 WP_002284422.1 1086988..1087677(-) (scnR) [Streptococcus mutans strain T8]
MNYKEKKILILDDNPEILEMVQESLSIAGFNNLTSVQSKKEVLEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=390300 FSA31_RS05330 WP_002284422.1 1086988..1087677(-) (scnR) [Streptococcus mutans strain T8]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAGCAT
TGCTGGTTTTAACAACCTAACAAGCGTGCAATCAAAAAAAGAGGTCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGTTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

98.253

100

0.983
  micA Streptococcus pneumoniae Cp1015

37.768

100

0.384
  vicR Streptococcus mutans UA159

35.776

100

0.362

Multiple sequence alignment