Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FSC11_RS09420 Genome accession   NZ_CP044483
Coordinates   1935448..1936152 (-) Length   234 a.a.
NCBI ID   WP_163166555.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930448..1941152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS09410 (FSC11_09415) clpB 1931388..1933967 (-) 2580 WP_163166551.1 ATP-dependent chaperone ClpB -
  FSC11_RS09415 (FSC11_09420) - 1934217..1935266 (-) 1050 WP_163166553.1 NADP(H)-dependent aldo-keto reductase -
  FSC11_RS09420 (FSC11_09425) crp 1935448..1936152 (-) 705 WP_163166555.1 cAMP-activated global transcriptional regulator CRP Regulator
  FSC11_RS09425 (FSC11_09430) - 1936300..1936722 (+) 423 WP_004812288.1 OsmC family protein -
  FSC11_RS09430 (FSC11_09435) - 1936802..1937833 (-) 1032 WP_163166557.1 metallophosphoesterase -
  FSC11_RS09435 (FSC11_09440) - 1938138..1940375 (-) 2238 WP_004894125.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26296.92 Da        Isoelectric Point: 4.6627

>NTDB_id=390258 FSC11_RS09420 WP_163166555.1 1935448..1936152(-) (crp) [Acinetobacter schindleri strain HZE30-1]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNELPAEDDSDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=390258 FSC11_RS09420 WP_163166555.1 1935448..1936152(-) (crp) [Acinetobacter schindleri strain HZE30-1]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGGCAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCGTATTTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAGAACTTCCATGAACTGAGCAAACAATATCCTGATTTGAGTTATGCGGTATTTGCGCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACCGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCGCGTTGTCTGATCGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTGCCAAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCCCGTGAAATGGTCGGTCGTGTGCTGAAAACCCTTGAAGAGCAAGGCATGATCGAAACGGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTGGAACAGAATGAATTACCAGCTGAAGATGATTCAGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.308

100

0.923
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406

Multiple sequence alignment