Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FSC11_RS01050 Genome accession   NZ_CP044483
Coordinates   226783..228201 (-) Length   472 a.a.
NCBI ID   WP_008306852.1    Uniprot ID   A0AAE7BVJ0
Organism   Acinetobacter schindleri strain HZE30-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 221783..233201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS01035 (FSC11_01040) lptG 222816..223886 (+) 1071 WP_004810149.1 LPS export ABC transporter permease LptG -
  FSC11_RS01040 (FSC11_01045) gpmI 224011..225561 (+) 1551 WP_163164649.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC11_RS01045 (FSC11_01050) - 225584..226756 (+) 1173 WP_163164651.1 S41 family peptidase -
  FSC11_RS01050 (FSC11_01055) pilR 226783..228201 (-) 1419 WP_008306852.1 sigma-54-dependent transcriptional regulator Regulator
  FSC11_RS01055 (FSC11_01060) pilS 228225..229790 (-) 1566 WP_163164653.1 two-component system sensor histidine kinase NtrB Regulator
  FSC11_RS01060 (FSC11_01065) - 229840..230475 (-) 636 WP_004896390.1 response regulator transcription factor GacA -
  FSC11_RS01065 (FSC11_01070) - 230698..231753 (+) 1056 WP_026056747.1 serine hydrolase -
  FSC11_RS01070 (FSC11_01075) thrC 231818..232957 (-) 1140 WP_004810136.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53557.55 Da        Isoelectric Point: 6.1261

>NTDB_id=390233 FSC11_RS01050 WP_008306852.1 226783..228201(-) (pilR) [Acinetobacter schindleri strain HZE30-1]
MEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKRLADHQYDACLTDLNLPDGNGLQLLEFISEHHPSLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYQSNQQDTLEYKMLIGQSKPIQQLRTTLHKIARSQ
APVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGAMQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPLGSDIEIDVDFRVISASHQDLEAQVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILLL
AEHFIQKICQEWQIPVKRLTERSKEQLLTQYYPGNVRELRNIIERAITLSDEDTIDIQHLQTAPLRQSFVTSEITSNIAS
ESSNTTDTFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=390233 FSC11_RS01050 WP_008306852.1 226783..228201(-) (pilR) [Acinetobacter schindleri strain HZE30-1]
GTGGAACAACAACCACTGGTACTATTGGTCGATGATGAAGAAGATCTCTGTACGCTCATGCAGATGTCGCTCATGCGTAT
GGGAATTCGCACGCATATCGCCCATCGTCTGGAGGATGCTAAAAAACGCCTGGCAGATCATCAGTATGATGCCTGCCTTA
CGGACTTGAATCTACCTGATGGTAATGGCTTGCAGCTACTGGAATTTATCAGTGAGCATCATCCTTCCCTACCGGTTGCT
GTGTTAACTGCCTATGGCAATATGGATATTGCTATTGCTGCACTCAAGGCAGGTGCCTTTGACTTTGTCAGTAAGCCGAT
TAATCAGAAACATCTGGAACAGTTACTGCAAAAAGCACTAAATAAGCCAGTAGATTACCAATCCAATCAGCAAGATACCC
TAGAATATAAAATGCTGATTGGCCAGTCCAAGCCGATTCAGCAATTACGTACGACCTTGCATAAAATTGCCCGCTCTCAA
GCCCCTGTATTTATCACCGGTGAATCTGGAACTGGAAAGGAAGTAGTGGCAAATCTGGTCCATCGCCTCAGTAACCGGAG
TGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATTCCAGCTGAACTGATGGAAAGTGAGCTGTTCGGGCACAAGAAAG
GTAGCTTTACTGGCGCCATGCAGGACAAACAGGGCCTGATCCAGTCTGCACATGGCGGCAGTTTATTTCTGGATGAAATT
GCAGAGCTTCCACTCAGTATGCAGGTCAAACTGCTACGTGCAGTACAGGAAAAACGGATTCGCCCTTTAGGTTCAGATAT
CGAAATTGATGTGGATTTTCGCGTCATCAGCGCCAGTCATCAGGACCTGGAAGCACAGGTACAGCAAGGTAAATTCCGTC
AGGATTTATTCTTCCGCATTCATGTGATGGATCTGGTGTTGCCACCATTACGTGAGCGTGGTAATGACATTCTGCTGCTG
GCTGAACACTTTATTCAGAAGATCTGTCAGGAATGGCAAATCCCTGTGAAACGCCTGACTGAACGTAGCAAAGAGCAGTT
ACTGACTCAATACTATCCAGGAAATGTCCGGGAATTGCGTAATATCATCGAGCGAGCAATTACCCTCAGCGATGAAGACA
CAATTGATATCCAGCATTTGCAAACTGCACCTTTACGCCAGAGTTTTGTGACTTCCGAAATCACATCGAATATAGCATCC
GAGTCGAGTAACACTACTGACACTTTTATCGTACCGAAAAAACTGCCTGAAGAAGGTCTTGAACTGTATATGGAGAAAAT
CGAGAAAGAAATTTTGCTAAATGCATTGAATCTGACTCACTGGAACCGTACGCTTGCCGCAAAAAAGTTGGGCATGTCTT
TCCGCTCGCTGCGTTATCGTCTGAAGAAATTTGGGCTCGATACCGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.752
  pilR Pseudomonas aeruginosa PAK

48.188

99.364

0.479

Multiple sequence alignment