Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FSC11_RS01055 Genome accession   NZ_CP044483
Coordinates   228225..229790 (-) Length   521 a.a.
NCBI ID   WP_163164653.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 223225..234790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS01040 (FSC11_01045) gpmI 224011..225561 (+) 1551 WP_163164649.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC11_RS01045 (FSC11_01050) - 225584..226756 (+) 1173 WP_163164651.1 S41 family peptidase -
  FSC11_RS01050 (FSC11_01055) pilR 226783..228201 (-) 1419 WP_008306852.1 sigma-54-dependent transcriptional regulator Regulator
  FSC11_RS01055 (FSC11_01060) pilS 228225..229790 (-) 1566 WP_163164653.1 two-component system sensor histidine kinase NtrB Regulator
  FSC11_RS01060 (FSC11_01065) - 229840..230475 (-) 636 WP_004896390.1 response regulator transcription factor GacA -
  FSC11_RS01065 (FSC11_01070) - 230698..231753 (+) 1056 WP_026056747.1 serine hydrolase -
  FSC11_RS01070 (FSC11_01075) thrC 231818..232957 (-) 1140 WP_004810136.1 threonine synthase -
  FSC11_RS01075 (FSC11_01080) - 233014..234318 (-) 1305 WP_004810134.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59364.69 Da        Isoelectric Point: 6.3959

>NTDB_id=390234 FSC11_RS01055 WP_163164653.1 228225..229790(-) (pilS) [Acinetobacter schindleri strain HZE30-1]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAIALFQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLFTVSSLGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=390234 FSC11_RS01055 WP_163164653.1 228225..229790(-) (pilS) [Acinetobacter schindleri strain HZE30-1]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAATCAATATCTGCTGGGCACTTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTGCTCACTTATCCTGAGCACACCAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCGCCTTGTTCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATCTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGTTTACCGTTTCCTCTCTGGGTAATATCGGCAATAGCGCCATACTG
GCTTTCATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCCATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTCTGGAACAGATTGAAACTGGCTATCTGGTCCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGCTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAAGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCGAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCTGCCAGTATT
GCCCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCCAATGATCTGTTACCTGGTTGTGAACAGGACCAGCAGCA
GGTGTTGCATGGCATGATCAGCAAACAGGCAACACGAATCAACCGGATTATTGAAGACACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGATATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTACGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTTGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGCTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAATTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.228

96.929

0.555

Multiple sequence alignment