Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FSC12_RS11125 Genome accession   NZ_CP044474
Coordinates   2339189..2339572 (+) Length   127 a.a.
NCBI ID   WP_004814763.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2334189..2344572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS11115 (FSC12_11210) - 2337036..2338169 (-) 1134 WP_163169301.1 efflux RND transporter periplasmic adaptor subunit -
  FSC12_RS11120 (FSC12_11215) - 2338221..2338880 (-) 660 WP_163169302.1 hypothetical protein -
  FSC12_RS11125 (FSC12_11220) pilG 2339189..2339572 (+) 384 WP_004814763.1 twitching motility response regulator PilG Regulator
  FSC12_RS11130 (FSC12_11225) - 2339603..2339971 (+) 369 WP_004814764.1 response regulator -
  FSC12_RS11135 (FSC12_11230) - 2339977..2340513 (+) 537 WP_004814765.1 chemotaxis protein CheW -
  FSC12_RS11140 (FSC12_11235) - 2340559..2342631 (+) 2073 WP_163169303.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14201.30 Da        Isoelectric Point: 4.7172

>NTDB_id=390221 FSC12_RS11125 WP_004814763.1 2339189..2339572(+) (pilG) [Acinetobacter schindleri strain HZE33-1]
MDDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQSYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLTAIRNHISA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=390221 FSC12_RS11125 WP_004814763.1 2339189..2339572(+) (pilG) [Acinetobacter schindleri strain HZE33-1]
ATGGACGATAAATTCCAAAATCTAAAAGTGATGGTCATTGATGATTCAAAAACCATTCGTCGTACAGCAGAAACTCTTCT
TCAGCGTGAAGGTTGTGAAGTCATTACCGCAGTAGACGGTTTTGAAGCATTGTCAAAAATTGCAGAAGCAAATCCCGACA
TCGTTTTTGTAGACATCATGATGCCTCGCCTCGATGGTTATCAGACTTGTGCCTTAATTAAAAACTCGCAAAGTTATCAG
AACATTCCTGTTATTATGCTATCGAGTAAAGATGGTTTGTTTGATCAGGCCAAAGGCCGTGTGGTAGGTTCAGATGAATA
TCTTACCAAGCCATTTAGCAAAGATGAGTTGCTTACCGCAATCCGCAACCATATCAGTGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

95.276

100

0.953
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment