Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FSC12_RS08705 Genome accession   NZ_CP044474
Coordinates   1841727..1843145 (-) Length   472 a.a.
NCBI ID   WP_008306852.1    Uniprot ID   A0AAE7BVJ0
Organism   Acinetobacter schindleri strain HZE33-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836727..1848145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS08690 (FSC12_08770) lptG 1837760..1838830 (+) 1071 WP_004810149.1 LPS export ABC transporter permease LptG -
  FSC12_RS08695 (FSC12_08775) gpmI 1838955..1840505 (+) 1551 WP_163169041.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC12_RS08700 (FSC12_08780) - 1840528..1841700 (+) 1173 WP_163169042.1 S41 family peptidase -
  FSC12_RS08705 (FSC12_08785) pilR 1841727..1843145 (-) 1419 WP_008306852.1 sigma-54 dependent transcriptional regulator Regulator
  FSC12_RS08710 (FSC12_08790) pilS 1843169..1844734 (-) 1566 WP_163169043.1 nitrogen regulation protein NR(II) Regulator
  FSC12_RS08715 (FSC12_08795) - 1844784..1845419 (-) 636 WP_004810139.1 response regulator -
  FSC12_RS08720 (FSC12_08800) - 1845644..1846699 (+) 1056 WP_026056747.1 serine hydrolase -
  FSC12_RS08725 (FSC12_08805) thrC 1846766..1847905 (-) 1140 WP_163169044.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53557.55 Da        Isoelectric Point: 6.1261

>NTDB_id=390207 FSC12_RS08705 WP_008306852.1 1841727..1843145(-) (pilR) [Acinetobacter schindleri strain HZE33-1]
MEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKRLADHQYDACLTDLNLPDGNGLQLLEFISEHHPSLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYQSNQQDTLEYKMLIGQSKPIQQLRTTLHKIARSQ
APVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGAMQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPLGSDIEIDVDFRVISASHQDLEAQVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILLL
AEHFIQKICQEWQIPVKRLTERSKEQLLTQYYPGNVRELRNIIERAITLSDEDTIDIQHLQTAPLRQSFVTSEITSNIAS
ESSNTTDTFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=390207 FSC12_RS08705 WP_008306852.1 1841727..1843145(-) (pilR) [Acinetobacter schindleri strain HZE33-1]
GTGGAACAACAACCACTGGTACTATTGGTCGATGATGAAGAAGATCTCTGTACGCTCATGCAGATGTCGCTCATGCGTAT
GGGAATTCGCACGCATATCGCCCATCGTCTGGAGGATGCTAAAAAACGCCTGGCAGATCATCAGTATGATGCCTGCCTTA
CGGACTTGAATCTACCTGATGGTAATGGCTTGCAGCTACTGGAATTTATCAGTGAGCATCATCCTTCCCTACCGGTTGCT
GTGTTAACTGCCTATGGCAATATGGATATTGCTATTGCTGCACTCAAGGCAGGTGCCTTTGACTTTGTCAGTAAGCCGAT
TAATCAGAAACATCTGGAACAGTTACTGCAAAAAGCACTAAATAAGCCAGTAGATTACCAATCCAATCAGCAAGATACCC
TAGAATATAAAATGCTGATTGGCCAGTCCAAGCCGATTCAGCAATTACGTACGACCTTGCATAAAATTGCCCGCTCTCAA
GCCCCTGTATTTATCACCGGTGAATCTGGAACTGGAAAGGAAGTAGTGGCAAATCTGGTCCATCGCCTCAGTAACCGGAG
TGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATTCCAGCTGAACTGATGGAAAGTGAGCTGTTCGGGCACAAGAAAG
GCAGCTTTACTGGCGCCATGCAGGACAAACAGGGGCTGATCCAGTCTGCGCATGGCGGCAGTTTATTTCTGGATGAAATC
GCAGAACTTCCACTTAGTATGCAGGTCAAACTGCTACGTGCAGTACAGGAAAAACGGATTCGCCCTTTAGGTTCAGATAT
CGAAATTGATGTGGATTTTCGCGTCATCAGCGCCAGTCATCAGGACCTGGAAGCACAGGTACAGCAAGGTAAATTCCGTC
AGGATTTATTCTTCCGCATTCATGTGATGGATCTGGTGTTGCCACCATTACGTGAGCGTGGTAATGACATTCTGCTGCTG
GCTGAACACTTTATTCAGAAGATCTGTCAGGAATGGCAAATCCCTGTGAAACGCCTGACTGAACGTAGCAAAGAGCAGTT
ACTGACTCAATACTATCCAGGAAATGTCCGGGAATTGCGTAATATCATCGAGCGAGCAATTACCCTCAGCGATGAAGACA
CAATTGATATCCAGCATTTGCAAACTGCACCTTTACGCCAGAGTTTTGTGACTTCCGAAATCACATCGAATATAGCATCC
GAGTCGAGTAACACTACTGACACTTTTATCGTACCGAAAAAACTGCCTGAAGAAGGCCTTGAACTGTATATGGAGAAAAT
CGAGAAAGAAATTTTGCTAAATGCATTGAATCTGACTCACTGGAACCGTACGCTTGCCGCAAAAAAGTTGGGCATGTCTT
TCCGCTCGCTGCGTTATCGTCTGAAGAAATTTGGGCTCGATACCGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.752
  pilR Pseudomonas aeruginosa PAK

48.188

99.364

0.479

Multiple sequence alignment