Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FSC12_RS08710 Genome accession   NZ_CP044474
Coordinates   1843169..1844734 (-) Length   521 a.a.
NCBI ID   WP_163169043.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838169..1849734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS08695 (FSC12_08775) gpmI 1838955..1840505 (+) 1551 WP_163169041.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  FSC12_RS08700 (FSC12_08780) - 1840528..1841700 (+) 1173 WP_163169042.1 S41 family peptidase -
  FSC12_RS08705 (FSC12_08785) pilR 1841727..1843145 (-) 1419 WP_008306852.1 sigma-54 dependent transcriptional regulator Regulator
  FSC12_RS08710 (FSC12_08790) pilS 1843169..1844734 (-) 1566 WP_163169043.1 nitrogen regulation protein NR(II) Regulator
  FSC12_RS08715 (FSC12_08795) - 1844784..1845419 (-) 636 WP_004810139.1 response regulator -
  FSC12_RS08720 (FSC12_08800) - 1845644..1846699 (+) 1056 WP_026056747.1 serine hydrolase -
  FSC12_RS08725 (FSC12_08805) thrC 1846766..1847905 (-) 1140 WP_163169044.1 threonine synthase -
  FSC12_RS08730 (FSC12_08810) - 1847962..1849266 (-) 1305 WP_163169045.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59340.71 Da        Isoelectric Point: 6.3959

>NTDB_id=390208 FSC12_RS08710 WP_163169043.1 1843169..1844734(-) (pilS) [Acinetobacter schindleri strain HZE33-1]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAITLIQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLLTLSSLGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=390208 FSC12_RS08710 WP_163169043.1 1843169..1844734(-) (pilS) [Acinetobacter schindleri strain HZE33-1]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAACCAATATCTGCTGGGCACTTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTGCTCACTTATCCTGAGCACACCAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCACCTTGATCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATTTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGCTTACCCTTTCCTCTCTGGGTAATATCGGCAATAGCGCCATATTG
GCTTTCATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCAATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTTTGGAACAGATTGAGACTGGTTATCTGGTCCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGCTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAAGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCGAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCTGCCAGTATT
GCCCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCCAATGATCTGTTACCTGGTTGTGAACAGGACCAGCAGCA
GGTGTTGCATGGCATGATCAGCAAGCAGGCAACACGAATCAACCGGATTATTGAAGACACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGATATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTACGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTTGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGCTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAATTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.03

96.929

0.553

Multiple sequence alignment