Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FSC12_RS01900 Genome accession   NZ_CP044474
Coordinates   389667..390371 (-) Length   234 a.a.
NCBI ID   WP_004894131.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 384667..395371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS01890 (FSC12_01900) clpB 385607..388186 (-) 2580 WP_004812293.1 ATP-dependent chaperone ClpB -
  FSC12_RS01895 (FSC12_01905) - 388437..389489 (-) 1053 WP_227591090.1 NADP(H)-dependent aldo-keto reductase -
  FSC12_RS01900 (FSC12_01910) crp 389667..390371 (-) 705 WP_004894131.1 cAMP-activated global transcriptional regulator CRP Regulator
  FSC12_RS01905 (FSC12_01915) - 390519..390941 (+) 423 WP_076753344.1 OsmC family protein -
  FSC12_RS01910 (FSC12_01920) - 391021..392061 (-) 1041 WP_163168349.1 metallophosphoesterase -
  FSC12_RS01915 (FSC12_01925) - 392369..394606 (-) 2238 WP_004894125.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26296.92 Da        Isoelectric Point: 4.6679

>NTDB_id=390191 FSC12_RS01900 WP_004894131.1 389667..390371(-) (crp) [Acinetobacter schindleri strain HZE33-1]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVPAEDDSEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=390191 FSC12_RS01900 WP_004894131.1 389667..390371(-) (crp) [Acinetobacter schindleri strain HZE33-1]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGGCAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCGTATCTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAAAACTTCCATGAACTGAGCAAACAATATCCTGACTTGAGTTATGCGGTATTTGCGCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACTGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCACGTTGTCTGATTGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTGCCAAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCCCGTGAAATGGTCGGTCGCGTACTGAAAACCCTGGAAGAGCAAGGCATGATCGAAACAGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTGGAACAGAACGAAGTACCAGCTGAAGATGATTCAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.162

100

0.932
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406

Multiple sequence alignment