Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FSC10_RS09510 Genome accession   NZ_CP044463
Coordinates   1941709..1942413 (-) Length   234 a.a.
NCBI ID   WP_163171544.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE23-1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936709..1947413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS09500 (FSC10_09515) clpB 1937648..1940227 (-) 2580 WP_163171542.1 ATP-dependent chaperone ClpB -
  FSC10_RS09505 (FSC10_09520) - 1940478..1941527 (-) 1050 WP_163171543.1 NADP(H)-dependent aldo-keto reductase -
  FSC10_RS09510 (FSC10_09525) crp 1941709..1942413 (-) 705 WP_163171544.1 cAMP-activated global transcriptional regulator CRP Regulator
  FSC10_RS09515 (FSC10_09530) - 1942561..1942983 (+) 423 WP_076753344.1 OsmC family protein -
  FSC10_RS09520 (FSC10_09535) - 1943062..1944102 (-) 1041 WP_163171545.1 metallophosphoesterase -
  FSC10_RS09525 (FSC10_09540) - 1944409..1946646 (-) 2238 WP_004894125.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26300.91 Da        Isoelectric Point: 4.6679

>NTDB_id=390175 FSC10_RS09510 WP_163171544.1 1941709..1942413(-) (crp) [Acinetobacter schindleri strain HZE23-1]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVTAEDDSEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=390175 FSC10_RS09510 WP_163171544.1 1941709..1942413(-) (crp) [Acinetobacter schindleri strain HZE23-1]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGGCAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCGTATTTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAAAACTTCCATGAATTAAGCAAACAATATCCTGACTTGAGTTATGCGGTCTTTGCCCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACTGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCACGTTGTCTGATCGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTGCCAAATGGCCGTCAGATTCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCCCGTGAAATGGTCGGCCGTGTGCTGAAAACCCTTGAAGAGCAAGGCATGATCGAAACGGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTGGAACAAAATGAAGTAACAGCTGAAGATGATTCAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.59

100

0.936
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406

Multiple sequence alignment