Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FSC09_RS13805 Genome accession   NZ_CP044455
Coordinates   2837068..2838627 (+) Length   519 a.a.
NCBI ID   WP_163146213.1    Uniprot ID   A0A6C0Y6B9
Organism   Acinetobacter indicus strain B18     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2832068..2843627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC09_RS13785 (FSC09_13845) - 2832518..2833822 (+) 1305 WP_016659702.1 homoserine dehydrogenase -
  FSC09_RS13790 (FSC09_13850) thrC 2833880..2835025 (+) 1146 WP_005181581.1 threonine synthase -
  FSC09_RS13795 (FSC09_13855) - 2835118..2836200 (-) 1083 WP_127799456.1 serine hydrolase -
  FSC09_RS13800 (FSC09_13860) - 2836418..2837053 (+) 636 WP_005181577.1 response regulator -
  FSC09_RS13805 (FSC09_13865) pilS 2837068..2838627 (+) 1560 WP_163146213.1 sensor histidine kinase Regulator
  FSC09_RS13810 (FSC09_13870) pilR 2838699..2840054 (+) 1356 WP_267313524.1 sigma-54-dependent transcriptional regulator Regulator
  FSC09_RS13815 (FSC09_13875) - 2840073..2841242 (-) 1170 WP_005181572.1 S41 family peptidase -
  FSC09_RS13820 (FSC09_13880) gpmI 2841266..2842813 (-) 1548 WP_005181570.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 59683.37 Da        Isoelectric Point: 7.5335

>NTDB_id=390140 FSC09_RS13805 WP_163146213.1 2837068..2838627(+) (pilS) [Acinetobacter indicus strain B18]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDQLSNGEKFQFESQLSHFLIHIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSAPDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVQIDLARFIPQLIQDDLASQIQ
VSQPEPLQILFDEPQLRQVLINLIRNAQRHNSPDHPIELQLYRQQNTVYMDVKDYGSGVASHDIRYLFQPFFSTEISGTG
LGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=390140 FSC09_RS13805 WP_163146213.1 2837068..2838627(+) (pilS) [Acinetobacter indicus strain B18]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGGATTCCGCTACAACTC
ACGCTGATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCCGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTAAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTCGGTATTAATCCGCTGTATGCTTTCGACAAA
TATCCGCTGTATAAAGTACAGCCCGATCTGTTTCAATTATTGCAGTTTGACCAGCTCTCCAACGGCGAAAAATTTCAGTT
TGAATCACAGCTGAGTCATTTCCTGATCCATATACAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCGCGGCAAATCAACCAGCGCGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCGGCAAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCCATTGTCCAGGCCAATCGCCTGCTGGCCGGCAGCGCCCCCGATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATCGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCAGATTGATCTGGCGCGTTTTATTCCGCAGCTGATTCAGGATGATCTGGCCAGCCAGATTCAG
GTCAGCCAGCCCGAACCTCTGCAGATTCTGTTTGATGAACCCCAGCTGCGTCAGGTGCTGATTAACCTGATCCGTAATGC
CCAGCGCCACAATTCGCCAGATCATCCGATTGAACTGCAACTTTATCGCCAGCAGAATACGGTCTATATGGATGTCAAAG
ATTATGGCAGCGGCGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGCGGAACTGGT
TTAGGATTATACTTATCACATAGTTTCTGCGAGGCTAATCGGGCCAAGCTGCGCTATGTAGAACAAAAACAAGGAGCATG
TTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-511)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0Y6B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.091

97.495

0.576

Multiple sequence alignment