Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HJD23_RS18445 Genome accession   NZ_CP053109
Coordinates   4142374..4142973 (-) Length   199 a.a.
NCBI ID   WP_171109735.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4137374..4147973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS18420 - 4137964..4138680 (+) 717 WP_171109730.1 response regulator transcription factor -
  HJD23_RS18425 - 4138677..4140050 (+) 1374 WP_171109731.1 HAMP domain-containing sensor histidine kinase -
  HJD23_RS18430 - 4140016..4140522 (-) 507 WP_171109732.1 SgcJ/EcaC family oxidoreductase -
  HJD23_RS18435 - 4140741..4141577 (+) 837 WP_171109733.1 PhzF family phenazine biosynthesis isomerase -
  HJD23_RS18440 - 4141719..4142381 (-) 663 WP_171109734.1 DUF5063 domain-containing protein -
  HJD23_RS18445 recR 4142374..4142973 (-) 600 WP_171109735.1 recombination mediator RecR Machinery gene
  HJD23_RS18450 - 4143033..4143374 (-) 342 WP_141310988.1 YbaB/EbfC family nucleoid-associated protein -
  HJD23_RS18455 - 4143686..4144435 (+) 750 WP_171109736.1 SLATT domain-containing protein -
  HJD23_RS18460 - 4144563..4146092 (-) 1530 WP_240980742.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21670.01 Da        Isoelectric Point: 5.1616

>NTDB_id=390141 HJD23_RS18445 WP_171109735.1 4142374..4142973(-) (recR) [Streptomyces sp. Z423-1]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPADVRRLAHALLEVKAKVRFCATCGNVAQEELCGICRDSRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=390141 HJD23_RS18445 WP_171109735.1 4142374..4142973(-) (recR) [Streptomyces sp. Z423-1]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCATGTGCTGCAGGCGGAGCCGGCGGACGTCCGTCGGCTCGCGCACGCCCTTCTGGAGGTCAAGGCGAAGGTCC
GGTTCTGCGCCACCTGCGGCAATGTCGCCCAGGAGGAGCTGTGCGGGATCTGCCGCGACAGCCGCCGCGATCCGGCGGTG
ATCTGTGTGGTCGAGGAACCCAAGGACGTCGTCGCCATCGAGCGCACGCGTGAGTTCCGCGGCCGCTACCACGTGCTGGG
TGGCGCGATCAGCCCGATCGAGGGCGTGGGCCCGGACGACCTGCGTATCCGAGAGCTTCTCGCGAGGTTGGCCGACGGGA
CGGTCACGGAGCTCATCCTGGCCACGGACCCGAATCTGGAGGGCGAGGCCACCGCGACGTACCTTGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGTCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457

Multiple sequence alignment