Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HJD23_RS13880 Genome accession   NZ_CP053109
Coordinates   3098495..3099469 (-) Length   324 a.a.
NCBI ID   WP_171107456.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3093495..3104469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS13855 - 3093553..3093963 (-) 411 WP_171107448.1 DUF6113 family protein -
  HJD23_RS13860 mshB 3093960..3094820 (-) 861 WP_171107450.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  HJD23_RS13865 - 3094851..3095045 (-) 195 WP_141313811.1 hypothetical protein -
  HJD23_RS13870 - 3095222..3097342 (+) 2121 WP_171107452.1 prolyl oligopeptidase family serine peptidase -
  HJD23_RS13875 - 3097465..3098502 (-) 1038 WP_171107454.1 dipeptide ABC transporter ATP-binding protein -
  HJD23_RS13880 amiE 3098495..3099469 (-) 975 WP_171107456.1 ABC transporter ATP-binding protein Regulator
  HJD23_RS13885 - 3099479..3100456 (-) 978 WP_171107458.1 ABC transporter permease -
  HJD23_RS13890 - 3100449..3101372 (-) 924 WP_171107460.1 ABC transporter permease -
  HJD23_RS13895 - 3101382..3103007 (-) 1626 WP_171107462.1 ABC transporter substrate-binding protein -
  HJD23_RS13900 - 3103229..3103969 (+) 741 WP_171107464.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35648.42 Da        Isoelectric Point: 6.7638

>NTDB_id=390128 HJD23_RS13880 WP_171107456.1 3098495..3099469(-) (amiE) [Streptomyces sp. Z423-1]
MLLDVRDLHVEFRTRDGVAKAVNGVTYSVDAGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEVLFQGRDLLKLKE
EERRKVRGAEMAMIFQDALSALNPVLSVGDQLGEMFVVHRGMSRKDARARAVELMDRVRIPAAKERVRQYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMELLAELRRELNMGLILITHDLGVVADVADRIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDQKGQELYAIKGLPPSLLNIPPGCAFHPRCPMARDVCRTDVPPLYEVSEERGSACHFWRE
CLHG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=390128 HJD23_RS13880 WP_171107456.1 3098495..3099469(-) (amiE) [Streptomyces sp. Z423-1]
ATGCTGCTCGACGTCCGTGATCTGCACGTGGAGTTCCGCACCCGGGACGGGGTCGCCAAGGCCGTCAACGGCGTCACCTA
CAGCGTGGACGCGGGCGAGACGCTCGCGGTGCTCGGCGAGTCGGGCTCCGGCAAGTCCGTCACCGCGCAGGCCGTGATGG
GCATCCTCGACATGCCGCCGGGGCGGATCACCGGCGGCGAGGTTCTCTTCCAGGGCAGGGACCTGCTCAAGCTGAAGGAG
GAGGAGCGGCGGAAGGTCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCGCGCTGAACCCCGTGCTGAG
CGTGGGCGACCAGCTCGGCGAGATGTTCGTCGTCCACCGGGGCATGTCGAGGAAGGACGCCCGGGCCAGGGCCGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCCGCCAAGGAGCGGGTGCGGCAGTACCCGCACCAGTTCTCCGGCGGGATGCGCCAG
CGCATCATGATCGCGATGGCGCTCGCCCTGGAACCCGCCCTGATCATCGCCGACGAGCCCACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGAACTGCTCGCGGAGCTGCGGCGCGAACTGAACATGGGGCTGATCCTCATCACCCACGACC
TCGGCGTGGTCGCCGACGTCGCCGACCGGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGTCGGCGCCGGTCCACGAC
ATCTACAAGGCGCCCGCCCACCCGTACACGCGGGGCCTGCTGGACTCCATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
GTACGCCATCAAGGGCCTGCCGCCGAGCCTGCTGAACATCCCGCCGGGCTGCGCCTTCCACCCGCGCTGCCCGATGGCCC
GGGACGTGTGCCGGACGGACGTGCCCCCGCTCTACGAGGTGTCCGAGGAGCGGGGGAGTGCCTGCCACTTCTGGAGGGAG
TGCCTGCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.106

99.074

0.457
  oppD Streptococcus mutans UA159

46.815

96.914

0.454
  amiE Streptococcus thermophilus LMG 18311

45.483

99.074

0.451
  amiE Streptococcus thermophilus LMD-9

45.483

99.074

0.451

Multiple sequence alignment