Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HJD23_RS11000 Genome accession   NZ_CP053109
Coordinates   2453771..2455978 (-) Length   735 a.a.
NCBI ID   WP_171114413.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2448771..2460978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS10970 rnc 2449528..2450424 (-) 897 WP_171114417.1 ribonuclease III -
  HJD23_RS10975 rpmF 2450444..2450617 (-) 174 WP_003951102.1 50S ribosomal protein L32 -
  HJD23_RS10980 - 2450620..2451267 (-) 648 WP_171114416.1 YceD family protein -
  HJD23_RS10985 - 2451397..2452455 (-) 1059 WP_171114415.1 cell division initiation protein -
  HJD23_RS10990 coaD 2452528..2453037 (-) 510 WP_141311584.1 pantetheine-phosphate adenylyltransferase -
  HJD23_RS10995 rsmD 2453034..2453621 (-) 588 WP_171114414.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HJD23_RS11000 recG 2453771..2455978 (-) 2208 WP_171114413.1 ATP-dependent DNA helicase RecG Machinery gene
  HJD23_RS11005 - 2456167..2458011 (+) 1845 WP_171114412.1 HSP90 family protein -
  HJD23_RS11010 - 2458008..2460965 (+) 2958 WP_171114411.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79605.12 Da        Isoelectric Point: 6.2166

>NTDB_id=390116 HJD23_RS11000 WP_171114413.1 2453771..2455978(-) (recG) [Streptomyces sp. Z423-1]
MDLVPALDEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPLDEHVTVVAQVADARLHTFASARA
PRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLKGDAEEAIDTWAGALI
PIYPATAKLESWKIGKAVQTVLPSAQEAVDPLPDSLREGRGLVSLPEALLKIHRPHTKADIAGARDRLKWDEAFVLQVAL
ARRRHADAQLPAVPRRPRPDGLLAAFDDRLPFTLTGGQQKVSEEIFADLATEHPMHRLLQGEVGSGKTLVALRAMLAVVD
AGGQAAMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRQALLDLATGEAGIVIGTHALIED
RVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPATD
KPHFLSRTWERVREEVSQGHQAYVVCPRIGDEEDDPKAAKKQKSPEDEADKRPPLAVLDMADQLASGPLQGLKVEVLHGR
MQPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATVMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEASPA
RQRLNAVAATLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEAREEAANVVAADPELTGLPGLRTAL
DALLDEEREQYLEKG

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=390116 HJD23_RS11000 WP_171114413.1 2453771..2455978(-) (recG) [Streptomyces sp. Z423-1]
ATGGATCTCGTGCCCGCACTGGACGAACCACTCAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCATCT
CGGCCTGCACACCGTCGGCGACCTGCTGCACCACTACCCGCGCAGATACGAGGAGCGGGGCCAGCTCACCCACCTCGCCG
ACCTCCCCCTGGACGAGCACGTCACGGTGGTCGCCCAGGTCGCCGACGCCCGTCTGCACACCTTCGCCTCCGCCAGGGCG
CCCCGCGGCAAGGGCCAGCGCCTGGAGGTGACGATCACCGACGGCAGCGGCCGGCTCCAACTGGTCTTCTTCGGCCACGG
CGTGCACAAACCCCACAAGGAACTGCTGCCGGGCACGCGCGCGATGTTCGCGGGCAAGGTCTCCGTCTTCAACCGCCGGC
TACAACTGGCACACCCGGCGTACGAGTTGCTGAAGGGCGACGCCGAGGAGGCGATCGACACCTGGGCGGGCGCCCTCATC
CCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCCGTCCAGACCGTGCTGCCCAGCGCCCAGGA
AGCCGTGGACCCGCTCCCGGACTCCCTGCGCGAGGGCCGCGGCCTGGTCTCCCTCCCCGAGGCCCTGCTGAAGATCCACC
GCCCGCACACCAAGGCGGACATCGCCGGCGCCCGCGACCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCCCTC
GCCCGCCGCCGGCACGCCGACGCCCAGCTCCCGGCGGTGCCCCGCAGGCCCAGGCCGGACGGCCTCCTCGCCGCCTTCGA
CGACCGGCTGCCGTTCACCCTCACCGGGGGCCAGCAGAAGGTCTCCGAGGAGATCTTCGCCGACTTGGCCACCGAGCACC
CCATGCACCGGCTGCTCCAGGGCGAGGTCGGCTCCGGCAAGACCCTGGTCGCCCTGCGCGCCATGCTCGCCGTCGTCGAC
GCGGGCGGGCAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGCTCGGTCGTGGAGATGATGGG
CGAGCTGGCCGAGGGAGGGATGCTCGGCGGCGCCGAGCACGCCACCAAGGTCGTGCTGCTCACGGGCTCGATGGGCGCGG
CCGCCCGCCGCCAGGCGCTGCTCGACCTGGCCACCGGCGAGGCCGGGATCGTGATCGGCACCCACGCGCTGATCGAGGAC
CGGGTGCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGACGCCCTGCG
CGGCAAGGGCAAGCAACCGCCCCACCTGCTGGTCATGACCGCCACACCGATCCCGCGCACGGTCGCCATGACGGTCTTCG
GCGACCTGGAGACCTCGGTCCTCGACCAGCTCCCGGCCGGCCGCTCCCCGATCGCCAGCCATGTCGTCCCCGCAACCGAC
AAACCCCACTTCCTGTCCCGCACCTGGGAGCGGGTGCGCGAGGAGGTCTCCCAGGGCCATCAGGCGTACGTCGTCTGCCC
GCGCATCGGCGACGAGGAGGACGACCCCAAGGCGGCGAAAAAGCAGAAGTCCCCCGAGGACGAGGCCGACAAACGCCCCC
CGCTCGCCGTCCTCGACATGGCCGACCAACTCGCGAGCGGCCCACTCCAGGGACTCAAGGTCGAGGTCCTGCACGGCCGT
ATGCAACCCGACGACAAGGACGCCGTCATGCGCCGGTTCGCCGCCGGAGAGACGGACGTCCTGGTGGCCACCACGGTCAT
CGAGGTCGGCGTGAACGTGCCGAACGCCACCGTGATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGCTCCACC
AGCTGCGCGGCCGCGTCGGCCGTGGCTCGGCGCCCGGACTGTGCCTGCTGGTCACCGAGATGCCCGAGGCCAGTCCCGCC
CGCCAGCGGCTGAACGCGGTGGCGGCCACGCTCGACGGCTTCGAACTCTCCCGCATCGACCTCGAACAGCGCCGCGAGGG
CGACGTCCTGGGCCAGGCCCAGTCCGGCGCCCGCACCAGCCTGCGCGTGCTCGCCGTCATCGAGGACGAGGAAATCATCG
CGGAGGCCCGCGAGGAGGCGGCCAACGTGGTCGCCGCCGACCCCGAGCTCACCGGCCTGCCGGGCCTACGCACGGCGCTG
GACGCCCTTTTGGACGAGGAAAGGGAGCAGTACTTGGAAAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(547-622)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(650-710)

DEAD/DEAH box helicase (DEAD)

(296-448)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.881

94.83

0.369
  recG/mmsA Streptococcus pneumoniae R6

37.815

97.143

0.367
  recG/mmsA Streptococcus pneumoniae R36A

37.815

97.143

0.367
  recG Bacillus subtilis subsp. subtilis str. 168

38.218

94.694

0.362

Multiple sequence alignment