Detailed information NTG0390059

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: FSC02_RS13690
• Genome accession: NZ_CP044445
• Coordinates: 2845149..2845592 (-)
• Length: 147 a.a.
• NCBI ID: WP_163170428.1
• Uniprot ID: -
• Organism: Acinetobacter indicus strain CMG3-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2840149..2850592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FSC02_RS13655 (FSC02_13710)	-	2840952..2841926 (+)	975	WP_104488271.1	lipase family alpha/beta hydrolase	-
FSC02_RS13660 (FSC02_13715)	-	2842050..2842271 (+)	222	WP_216072231.1	esterase/lipase family protein	-
FSC02_RS16225	-	2842271..2842411 (+)	141	WP_228721960.1	hypothetical protein	-
FSC02_RS16230	-	2842513..2842788 (+)	276	WP_225876382.1	hypothetical protein	-
FSC02_RS13670 (FSC02_13725)	rplS	2842853..2843227 (-)	375	WP_003792460.1	50S ribosomal protein L19	-
FSC02_RS13675 (FSC02_13730)	trmD	2843400..2844149 (-)	750	WP_163170427.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FSC02_RS13680 (FSC02_13735)	rimM	2844176..2844724 (-)	549	WP_016658481.1	ribosome maturation factor RimM	-
FSC02_RS13685 (FSC02_13740)	rpsP	2844753..2845010 (-)	258	WP_004809941.1	30S ribosomal protein S16	-
FSC02_RS13690 (FSC02_13745)	comF	2845149..2845592 (-)	444	WP_163170428.1	type IV pilin protein	Machinery gene
FSC02_RS13695 (FSC02_13750)	-	2845579..2846118 (-)	540	WP_163170429.1	type IV pilin protein	-
FSC02_RS16235	-	2846128..2850492 (-)	4365	WP_228721961.1	pilus assembly protein	-

Sequence

Protein

• Length: 147 a.a.
• Molecular weight: 15916.08 Da
• Isoelectric Point: 8.4686

>NTDB_id=390059 FSC02_RS13690 WP_163170428.1 2845149..2845592(-) (comF) [Acinetobacter indicus strain CMG3-2]
MRVGNHENGFTLIELMIVVAVIAILAAIAMPSYTSYKVRANRVEVQTELMQLAQRLQSYKAMNHSYRNATLASIGGSGTF
PSHQALYNIDLVIDASNQAYVLSALPTSTGAQKGNGGLSLDQTGRQCWFKGKDSPVATDTCSTWSDK

Nucleotide

• Length: 444 bp

>NTDB_id=390059 FSC02_RS13690 WP_163170428.1 2845149..2845592(-) (comF) [Acinetobacter indicus strain CMG3-2]
ATGAGAGTTGGTAATCATGAAAACGGATTTACACTAATTGAACTGATGATTGTTGTTGCTGTCATAGCTATTTTGGCTGC
AATTGCGATGCCATCCTATACTAGTTATAAAGTCCGTGCCAATCGTGTAGAGGTTCAAACGGAGTTGATGCAACTCGCGC
AGCGTTTGCAAAGTTATAAGGCGATGAATCATAGTTATCGAAATGCAACATTGGCGAGTATTGGAGGAAGCGGTACGTTT
CCAAGTCATCAAGCTTTATATAATATTGATTTGGTAATTGACGCATCTAATCAAGCATACGTGTTATCTGCCTTACCTAC
TTCTACAGGGGCACAGAAAGGGAATGGCGGCTTGAGCCTCGATCAAACAGGGCGACAATGCTGGTTTAAAGGTAAAGATT
CACCTGTAGCAACAGACACTTGTTCTACCTGGTCCGATAAATAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (31-112)

• Prokaryotic N-terminal methylation motif (N_methyl) (5-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	49.324	100	0.497
pilE	Acinetobacter baumannii D1279779	43.662	96.599	0.422