Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FSC02_RS13400 Genome accession   NZ_CP044445
Coordinates   2792130..2792765 (+) Length   211 a.a.
NCBI ID   WP_163170415.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CMG3-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2787130..2797765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC02_RS13390 (FSC02_13445) - 2789249..2790064 (-) 816 WP_127801052.1 SDR family oxidoreductase -
  FSC02_RS13395 (FSC02_13450) recG 2790098..2792143 (+) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  FSC02_RS13400 (FSC02_13455) comF 2792130..2792765 (+) 636 WP_163170415.1 ComF family protein Machinery gene
  FSC02_RS13405 (FSC02_13460) - 2792788..2793189 (-) 402 WP_168399737.1 NUDIX hydrolase -
  FSC02_RS13410 (FSC02_13465) - 2793192..2793785 (-) 594 WP_163170416.1 TIGR00730 family Rossman fold protein -
  FSC02_RS13415 (FSC02_13470) - 2793938..2794951 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  FSC02_RS13420 (FSC02_13475) - 2795088..2795375 (-) 288 WP_045795311.1 STAS domain-containing protein -
  FSC02_RS13425 (FSC02_13480) - 2795387..2796019 (-) 633 WP_127801054.1 phospholipid-binding protein MlaC -
  FSC02_RS13430 (FSC02_13485) - 2796038..2796709 (-) 672 WP_075168244.1 outer membrane lipid asymmetry maintenance protein MlaD -
  FSC02_RS13435 (FSC02_13490) mlaE 2796709..2797488 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24356.38 Da        Isoelectric Point: 9.2130

>NTDB_id=390058 FSC02_RS13400 WP_163170415.1 2792130..2792765(+) (comF) [Acinetobacter indicus strain CMG3-2]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLQQLPWLKANVYRQETEIQVACHYRYPVDRMIQQFKYEQQLHY
QPLLAGSLCELAYPRVQAIVPIPVATERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390058 FSC02_RS13400 WP_163170415.1 2792130..2792765(+) (comF) [Acinetobacter indicus strain CMG3-2]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGATTGCTTGCAGCAACTGCCATGGTTAAAAGCAAACGTCTACCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATGATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGCCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTCCCGATACCGGTGGCAACCGA
GCGACTGGCAGAGCGTGGCTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGCCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGCTTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.024

99.052

0.545
  comF Acinetobacter baumannii strain A118

55.024

99.052

0.545

Multiple sequence alignment