Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   F7V86_RS19470 Genome accession   NZ_CP044444
Coordinates   3870025..3870360 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3865025..3875360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS19450 gcvT 3865631..3866731 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  F7V86_RS19455 - 3867155..3868825 (+) 1671 WP_017418135.1 DEAD/DEAH box helicase -
  F7V86_RS19460 - 3868847..3869641 (+) 795 WP_014305407.1 YqhG family protein -
  F7V86_RS19465 sinI 3869818..3869991 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  F7V86_RS19470 sinR 3870025..3870360 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  F7V86_RS19475 tasA 3870408..3871193 (-) 786 WP_017418136.1 biofilm matrix protein TasA -
  F7V86_RS19480 sipW 3871258..3871842 (-) 585 WP_012117977.1 signal peptidase I SipW -
  F7V86_RS19485 tapA 3871814..3872485 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  F7V86_RS19490 - 3872744..3873073 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  F7V86_RS19495 - 3873114..3873293 (-) 180 WP_003153093.1 YqzE family protein -
  F7V86_RS19500 comGG 3873350..3873727 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  F7V86_RS19505 comGF 3873728..3874123 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  F7V86_RS19510 comGE 3874137..3874451 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  F7V86_RS19515 comGD 3874435..3874872 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  F7V86_RS19520 comGC 3874862..3875170 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=390010 F7V86_RS19470 WP_003153104.1 3870025..3870360(+) (sinR) [Bacillus amyloliquefaciens strain KC41]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=390010 F7V86_RS19470 WP_003153104.1 3870025..3870360(+) (sinR) [Bacillus amyloliquefaciens strain KC41]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment