Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   F7V86_RS04080 Genome accession   NZ_CP044444
Coordinates   774021..774710 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain KC41     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 769021..779710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS04045 - 769219..769701 (-) 483 WP_022553865.1 flagellar protein FlgN -
  F7V86_RS04050 flgM 769716..769982 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  F7V86_RS04055 - 770052..770471 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  F7V86_RS04060 comFC 770545..771234 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  F7V86_RS04065 - 771240..771524 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  F7V86_RS04070 comFA 771582..772967 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  F7V86_RS04075 - 773075..773923 (-) 849 WP_003151387.1 DegV family protein -
  F7V86_RS04080 degU 774021..774710 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F7V86_RS04085 degS 774787..775950 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  F7V86_RS04090 - 776173..776820 (+) 648 WP_003151384.1 YigZ family protein -
  F7V86_RS04095 - 776825..778018 (+) 1194 WP_151140083.1 LCP family protein -
  F7V86_RS04100 - 778117..779193 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=389961 F7V86_RS04080 WP_003219701.1 774021..774710(-) (degU) [Bacillus amyloliquefaciens strain KC41]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=389961 F7V86_RS04080 WP_003219701.1 774021..774710(-) (degU) [Bacillus amyloliquefaciens strain KC41]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment