Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   F7V86_RS04060 Genome accession   NZ_CP044444
Coordinates   770545..771234 (-) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain KC41     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765545..776234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS04025 fliW 765636..766067 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  F7V86_RS04030 - 766097..766666 (-) 570 WP_003151397.1 DUF6470 family protein -
  F7V86_RS04035 flgL 766757..767674 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  F7V86_RS04040 flgK 767686..769203 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  F7V86_RS04045 - 769219..769701 (-) 483 WP_022553865.1 flagellar protein FlgN -
  F7V86_RS04050 flgM 769716..769982 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  F7V86_RS04055 - 770052..770471 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  F7V86_RS04060 comFC 770545..771234 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  F7V86_RS04065 - 771240..771524 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  F7V86_RS04070 comFA 771582..772967 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  F7V86_RS04075 - 773075..773923 (-) 849 WP_003151387.1 DegV family protein -
  F7V86_RS04080 degU 774021..774710 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F7V86_RS04085 degS 774787..775950 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=389959 F7V86_RS04060 WP_199803302.1 770545..771234(-) (comFC) [Bacillus amyloliquefaciens strain KC41]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=389959 F7V86_RS04060 WP_199803302.1 770545..771234(-) (comFC) [Bacillus amyloliquefaciens strain KC41]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
AGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment