Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MPQ_RS01195 Genome accession   NC_014733
Coordinates   255328..256659 (-) Length   443 a.a.
NCBI ID   WP_041361924.1    Uniprot ID   -
Organism   Methylovorus sp. MP688     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 250328..261659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPQ_RS01170 (MPQ_0236) - 250521..251750 (+) 1230 WP_013441051.1 dicarboxylate/amino acid:cation symporter -
  MPQ_RS01175 (MPQ_0237) azu 251944..252393 (+) 450 WP_013441052.1 azurin -
  MPQ_RS01180 (MPQ_0239) - 252651..253580 (+) 930 WP_013441054.1 DMT family transporter -
  MPQ_RS01185 (MPQ_0240) ampD 253606..254139 (-) 534 WP_369750492.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MPQ_RS01190 (MPQ_0241) - 254235..255236 (+) 1002 WP_013441056.1 sodium:calcium antiporter -
  MPQ_RS01195 (MPQ_0242) pilR 255328..256659 (-) 1332 WP_041361924.1 sigma-54 dependent transcriptional regulator Regulator
  MPQ_RS01200 (MPQ_0243) - 256652..258241 (-) 1590 WP_049821858.1 nitrogen regulation protein NR(II) -
  MPQ_RS01205 (MPQ_0244) - 258231..258473 (-) 243 WP_013441059.1 PP0621 family protein -
  MPQ_RS01210 (MPQ_0245) - 258672..259268 (+) 597 WP_013441060.1 RNA polymerase sigma factor -
  MPQ_RS01215 (MPQ_0246) - 259265..259639 (+) 375 WP_013441061.1 DUF3619 family protein -
  MPQ_RS01220 (MPQ_0247) - 259615..260061 (+) 447 WP_013441062.1 DUF3106 domain-containing protein -
  MPQ_RS01225 (MPQ_0248) - 260095..260520 (+) 426 WP_049821859.1 RDD family protein -
  MPQ_RS01230 (MPQ_0249) lptG 260526..261596 (-) 1071 WP_013441064.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 48716.74 Da        Isoelectric Point: 6.1872

>NTDB_id=38991 MPQ_RS01195 WP_041361924.1 255328..256659(-) (pilR) [Methylovorus sp. MP688]
MANPLNCLVVDDEHDIRELIVMTLTRMGLKADSAANLDDAKFMLRQKSYALCLTDMRLPDGNGLDLVRYINQHHAGLPVA
VITAYGSADNAVSALKAGAFDYITKPISLQQLRPLVQSALNLPNAAGNVSGPSLVGESTALQQIRATITKLSRNQAPVFI
SGEAGTGKSLVARLIHQSSSRQSGAFITLDCSAIPEQQLEKEIFGDEDEPGALQKASGGTLFFKEIAALPLASQVRLLRA
IQDKSISIPGQRKEETIDVRIISASQRNLTAMMERGQFRQDLYYRLNVIALDLPALRDIPEDIAAISQYLLKRLCQSQKI
DVPLIARETQQMLLQHYYPGNVRELETILERALTLHDGRSLQPTDLRLQTESKRVALEIEANGLPLPDYLESIEKQAILN
ALERTGHNKTAAAKLLGVSFRTLRYRLSKLGLGKDSDGDDDED

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=38991 MPQ_RS01195 WP_041361924.1 255328..256659(-) (pilR) [Methylovorus sp. MP688]
ATGGCTAACCCACTCAACTGCCTCGTCGTGGATGATGAACACGACATCCGCGAACTGATCGTCATGACACTGACACGCAT
GGGCCTCAAAGCCGATAGTGCAGCCAACCTGGACGATGCCAAATTCATGCTGCGGCAAAAATCCTACGCCCTGTGCCTGA
CCGATATGCGGCTGCCCGACGGCAATGGGCTGGACCTGGTGCGCTATATCAATCAGCACCATGCCGGGTTGCCAGTCGCG
GTGATTACCGCTTACGGCAGCGCCGATAATGCGGTCTCCGCCCTCAAGGCAGGCGCCTTTGATTACATTACCAAACCCAT
TTCGCTGCAACAATTGCGACCCCTGGTGCAATCCGCGCTCAACCTGCCAAATGCTGCCGGCAATGTCAGCGGCCCCAGTC
TGGTGGGGGAGTCGACGGCGCTGCAACAGATACGCGCCACCATCACCAAGCTTTCCCGCAATCAGGCGCCCGTCTTCATC
AGCGGCGAGGCCGGAACCGGAAAATCGCTGGTTGCGCGTCTGATCCATCAGTCCAGCTCGCGCCAGAGCGGCGCATTCAT
TACCCTGGACTGCAGCGCCATCCCCGAGCAGCAGCTGGAAAAAGAAATCTTTGGTGACGAAGATGAACCTGGCGCACTGC
AGAAAGCCTCCGGTGGCACGCTTTTCTTCAAGGAGATTGCCGCCCTGCCGCTGGCCAGCCAGGTGCGCCTGCTGCGCGCC
ATTCAGGACAAATCGATTTCCATCCCCGGGCAGCGCAAGGAAGAAACCATCGATGTCCGCATCATCAGTGCTTCCCAGCG
TAATCTGACCGCCATGATGGAGCGTGGGCAGTTTCGCCAGGACCTCTATTACCGGCTCAACGTGATCGCGCTGGACCTGC
CCGCCCTGCGCGACATTCCCGAAGATATTGCCGCTATCAGCCAATACCTGCTCAAACGCCTGTGCCAGAGCCAGAAAATA
GATGTTCCGCTGATCGCACGCGAAACCCAGCAAATGCTGTTACAGCACTATTACCCCGGCAATGTTCGGGAGCTGGAAAC
CATACTGGAACGTGCACTCACCTTGCATGATGGGCGCAGCCTGCAGCCCACTGACCTGCGCCTGCAAACAGAAAGCAAGC
GGGTTGCGCTGGAAATTGAAGCTAATGGCCTGCCCCTGCCAGACTATCTGGAAAGCATAGAAAAGCAGGCGATTCTGAAC
GCGCTGGAAAGAACTGGCCATAACAAGACGGCTGCCGCCAAGTTGCTCGGCGTCAGCTTTCGCACCCTGCGCTATCGCCT
TTCCAAGCTGGGTTTGGGTAAAGACAGCGATGGGGATGATGACGAGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-291)

Bacterial regulatory protein, Fis family (HTH_8)

(390-430)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.55

100

0.497
  pilR Acinetobacter baumannii strain A118

42.333

100

0.442

Multiple sequence alignment