Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HKO16_RS16270 Genome accession   NZ_CP053098
Coordinates   3422248..3424293 (+) Length   681 a.a.
NCBI ID   WP_000204953.1    Uniprot ID   -
Organism   Acinetobacter baumannii ATCC 17978     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3417248..3429293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKO16_RS16255 (HKO16_16280) plsB 3417729..3420302 (+) 2574 WP_000045404.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HKO16_RS16260 (HKO16_16285) adeT2 3420346..3421332 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  HKO16_RS16265 (HKO16_16290) - 3421412..3422227 (-) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  HKO16_RS16270 (HKO16_16295) recG 3422248..3424293 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG Machinery gene
  HKO16_RS16275 (HKO16_16300) comF 3424286..3424921 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  HKO16_RS16280 (HKO16_16305) - 3424924..3425325 (-) 402 WP_000849701.1 NUDIX hydrolase -
  HKO16_RS16285 (HKO16_16310) - 3425340..3425921 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  HKO16_RS16290 (HKO16_16315) - 3426079..3427092 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  HKO16_RS16295 (HKO16_16320) - 3427162..3427449 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  HKO16_RS16300 (HKO16_16325) - 3427461..3428102 (-) 642 WP_009518191.1 phospholipid-binding protein MlaC -
  HKO16_RS16305 (HKO16_16330) - 3428129..3428809 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76435.01 Da        Isoelectric Point: 7.7343

>NTDB_id=389831 HKO16_RS16270 WP_000204953.1 3422248..3424293(+) (recG) [Acinetobacter baumannii ATCC 17978]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILNDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGITVAWLSGKQKGKARAHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPELNIGLVHGKMKADEKQAVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=389831 HKO16_RS16270 WP_000204953.1 3422248..3424293(+) (recG) [Acinetobacter baumannii ATCC 17978]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTGCTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGGTAGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGTGTAGGTGCACGAGGACTTGAGCTTTATCATCCAGAAATTCAACTTATTAATGAACATACAC
CACTACCAAAAACGCAGCTCACTGCAATTTATCCAAGTACCGATGGCCTAACACAAGCTAAATTACGCGAATATGTTAAA
CAAGCGTTGAAGCATCATAGTGATGCCTTACCCGAGTTACTCCCTAAACAATATACAAATGGGTATGCACTCAAAGAAGC
TTTACATTACATTCACGAGCCGCCAGTTGATGCCAATATGATCCAACTGGCTCAAGGCTCTCATCCTGCGCAGCAACGTC
TTATTTTTGAAGAGCTGGTCGCACATCAAATTAGTCTTCTCACTCGACGTGCTTATATTCGCCAAATTGCTTCACCTGCT
TTTCCGAGTAGTAAAGTGCTTGCAAAAAAGCTACTAGAAGCTTTACCTTTTCAAATGACCAACGCACAAAAACGTGTATC
AAAAGAAATTTTAAACGACTTAAAACAACATCAACCTATGCTGCGTTTGGTACAAGGTGATGTAGGGGCTGGAAAAACTT
TAGTTGCAGCGGTTGCAGCATGTCATGCATTAGAAGCAGATTGGCAAGTTGCGTTAATGGCACCCACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAACGCTGGTTTGAACCTTTAGGTATTACGGTAGCTTGGTTGTCGGGTAAACAAAAAGG
GAAAGCGCGGGCACACGCTGAGCAACAAATTAAAGAAGGCCATGCTGAACTGATCGTGGGCACCCATGCCTTATTTCAAG
ATAACGTTGAATTTGCAAAACTAGGACTCGTGATTATTGATGAACAGCACCGATTCGGGGTCGATCAACGATTAGCCTTA
CGCAATAAAGGCGCCGAACAGCTCACCCCACATCAACTGGTCATGACTGCAACTCCAATTCCTAGAACACTGGCAATGAG
TGCTTATGGCGATTTAGATACATCAATTATTGATGAATTACCCCCAGGCCGAACTCCAATTCAGACCGTCACGATTCCGC
TAGATCGTCGTGAAGAAGTACTGCATCGAATTGCTTCAAACTGCCGAGAAGGCAAACAGGCCTACTGGGTATGTACTCTG
GTTGAACAGTCCGAAACTTTAGATGCTCAAGCCGCCGAAGCCACCTATCAAGAAATGAAAGAGCGCTTTCCTGAACTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCCGATGAAAAACAGGCTGTCATGCAAGCATTTAAAAACAATGAACTACAAC
TGCTAATTGCCACAACTGTTATTGAGGTTGGAGTAGATGTACCCAATGCGTCAATTATGGTCATTGAAAATGCTGAACGA
TTAGGGCTTTCACAGCTACACCAATTACGAGGGCGTGTAGGACGAGGTGCAAAAGCCAGTTTTTGCGTTCTTCTCTATAA
ACCACCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAATGATGGCTTTGTTATTGCTGAAAAAG
ATCTTGAGCTAAGAGGCCCGGGTGAGTTATTAGGAACAAAACAAACAGGTGATATGGGTTTCCGTGTCGCACGTTTAGAG
CGAGATGATCATTTATTGAGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTT
ATTGAAGCGCTGGCTTCCTGAAGCTCCTCGATACGCATATGTTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(466-576)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(262-422)

RecG wedge domain (RecG_wedge)

(7-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.925

98.238

0.49
  recG/mmsA Streptococcus pneumoniae R6

41.504

97.651

0.405
  recG/mmsA Streptococcus pneumoniae R36A

41.504

97.651

0.405
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389

Multiple sequence alignment