Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BACIH_RS14530 Genome accession   NZ_CP044360
Coordinates   2942585..2943229 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain V167     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2937585..2948229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS14495 (BACIH_2953) - 2938770..2939201 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  BACIH_RS14500 (BACIH_2954) - 2939201..2939542 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BACIH_RS14505 (BACIH_2955) - 2939535..2941016 (+) 1482 WP_041482212.1 Na+/H+ antiporter subunit D -
  BACIH_RS14510 (BACIH_2956) - 2941022..2941498 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  BACIH_RS14515 (BACIH_2957) - 2941498..2941782 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BACIH_RS14520 (BACIH_2958) mnhG 2941766..2942140 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BACIH_RS14525 (BACIH_2959) - 2942180..2942563 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  BACIH_RS14530 (BACIH_2960) comA 2942585..2943229 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BACIH_RS14535 (BACIH_2961) comP 2943310..2945610 (-) 2301 WP_077411086.1 histidine kinase Regulator
  BACIH_RS14540 (BACIH_2962) comX 2945624..2945797 (-) 174 WP_012118314.1 competence pheromone ComX -
  BACIH_RS14545 (BACIH_2963) - 2945812..2946627 (-) 816 WP_191973487.1 polyprenyl synthetase family protein -
  BACIH_RS14550 (BACIH_2964) degQ 2946836..2946976 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BACIH_RS14560 (BACIH_2966) - 2947441..2947782 (+) 342 WP_012118316.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=389689 BACIH_RS14530 WP_003152052.1 2942585..2943229(-) (comA) [Bacillus amyloliquefaciens strain V167]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=389689 BACIH_RS14530 WP_003152052.1 2942585..2943229(-) (comA) [Bacillus amyloliquefaciens strain V167]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACGTCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment