Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BACIH_RS11580 Genome accession   NZ_CP044360
Coordinates   2379350..2379658 (-) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain V167     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2374350..2384658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACIH_RS11530 (BACIH_2353) sinR 2374514..2374849 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BACIH_RS11535 (BACIH_2354) tasA 2374897..2375682 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BACIH_RS11540 (BACIH_2355) sipW 2375747..2376331 (-) 585 WP_012117977.1 signal peptidase I SipW -
  BACIH_RS11545 (BACIH_2356) tapA 2376303..2376974 (-) 672 WP_012117978.1 amyloid fiber anchoring/assembly protein TapA -
  BACIH_RS11550 (BACIH_2357) - 2377233..2377562 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  BACIH_RS11555 (BACIH_2358) - 2377602..2377781 (-) 180 WP_003153093.1 YqzE family protein -
  BACIH_RS11560 (BACIH_2359) comGG 2377838..2378215 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  BACIH_RS11565 (BACIH_2360) comGF 2378216..2378716 (-) 501 WP_012117981.1 competence type IV pilus minor pilin ComGF -
  BACIH_RS11570 (BACIH_2361) comGE 2378625..2378939 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  BACIH_RS11575 (BACIH_2362) comGD 2378923..2379360 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  BACIH_RS11580 (BACIH_2363) comGC 2379350..2379658 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  BACIH_RS11585 (BACIH_2364) comGB 2379663..2380700 (-) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  BACIH_RS11590 (BACIH_2365) comGA 2380687..2381757 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  BACIH_RS11595 (BACIH_2366) - 2381954..2382904 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  BACIH_RS11600 (BACIH_2367) - 2383050..2384351 (+) 1302 WP_012117986.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=389674 BACIH_RS11580 WP_003153087.1 2379350..2379658(-) (comGC) [Bacillus amyloliquefaciens strain V167]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=389674 BACIH_RS11580 WP_003153087.1 2379350..2379658(-) (comGC) [Bacillus amyloliquefaciens strain V167]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment