Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   HHM66_RS08950 Genome accession   NZ_CP053074
Coordinates   1805660..1807675 (-) Length   671 a.a.
NCBI ID   WP_015058019.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800660..1812675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS08930 (HHM66_08950) - 1801455..1801907 (+) 453 WP_003052566.1 universal stress protein -
  HHM66_RS08935 (HHM66_08955) - 1802070..1803458 (-) 1389 WP_003052568.1 Cof-type HAD-IIB family hydrolase -
  HHM66_RS08940 (HHM66_08960) - 1803531..1804496 (+) 966 WP_003053845.1 asparaginase -
  HHM66_RS08945 (HHM66_08965) - 1804546..1805463 (-) 918 WP_012767517.1 aldo/keto reductase -
  HHM66_RS08950 (HHM66_08970) recG/mmsA 1805660..1807675 (-) 2016 WP_015058019.1 ATP-dependent DNA helicase RecG Machinery gene
  HHM66_RS08955 (HHM66_08975) - 1807776..1809230 (-) 1455 WP_042357985.1 ABC transporter ATP-binding protein -
  HHM66_RS08960 (HHM66_08980) - 1809167..1809847 (-) 681 WP_003060027.1 energy-coupling factor transporter transmembrane component T -
  HHM66_RS08965 (HHM66_08985) - 1809844..1810437 (-) 594 WP_003053895.1 MptD family putative ECF transporter S component -
  HHM66_RS08970 (HHM66_08990) - 1810434..1812104 (-) 1671 WP_015058020.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75152.81 Da        Isoelectric Point: 6.2964

>NTDB_id=389487 HHM66_RS08950 WP_015058019.1 1805660..1807675(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MLLTAPIAHLKGLGPKSAEKFQKLGIYQIEDLLLYYPFRYEDFKSKSVLELLDGEKAVITGTLVTPPNVQYYGFKRNRLT
FKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGKWDQKKTALTGMKLLMTVEDDLQPVYHVAQGVSQTALIKAIKAAFD
SGALDELKENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYKQALRRIKFEELFYFQLRLQVLKQANRSENSGLAIAFDQE
KINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LIKLFPNLSIAILTSGMKAPEKQTALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLR
GRVGRGHKQSYAILVANSKTESGKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARK
VATMITSEPHWEQQEEWQMVLNYLDTTADFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=389487 HHM66_RS08950 WP_015058019.1 1805660..1807675(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGCTATTAACAGCTCCGATTGCTCACTTAAAAGGCCTAGGACCCAAGTCAGCAGAAAAATTTCAAAAATTAGGTATTTA
TCAGATAGAAGACCTATTGCTCTACTATCCTTTTCGTTATGAAGATTTTAAGAGCAAGTCGGTGTTAGAGCTGTTAGATG
GTGAAAAAGCCGTTATCACAGGAACCCTTGTGACCCCGCCGAATGTACAATATTACGGGTTCAAACGAAACCGGCTGACC
TTTAAAATCAAACAAGGAGAAGTGGTGATAGGGGTTAGTTTTTTCAACCAACCCTATTTACAGGATAAATTAACGCTGGG
CAATGAAGTTGCTATTTTTGGAAAATGGGACCAGAAAAAAACAGCTCTAACAGGTATGAAATTGCTGATGACTGTGGAGG
ATGACTTGCAGCCAGTTTATCATGTAGCTCAGGGAGTCAGTCAAACAGCACTCATTAAAGCCATTAAAGCAGCTTTTGAT
AGTGGTGCTTTAGACGAATTGAAAGAGAATATCCCAGATAGTCTTCTTGAGAAATATCGATTAATGCCAAGGCAAGAAGC
AGTTTATGCCATGCATTTTCCTAAAACCTTGACTGACTATAAGCAGGCGTTGAGGCGTATTAAGTTCGAAGAACTCTTTT
ATTTTCAACTGCGACTGCAGGTCTTGAAACAAGCCAATAGGTCAGAAAACAGTGGATTAGCCATCGCATTTGATCAGGAA
AAGATAAATCATCAAATTGCTGCTCTGCCATTTCCTTTAACTCAAGCGCAGGAACGTAGTTTACAGGAAATTTTGAGGGA
TATGCGTTCAGGTGCCCATATGAATCGGCTGTTGCAAGGGGATGTTGGTTCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCGGCTTATACAGCAGGGCTTCAATCGGCACTAATGGTACCCACAGAAATTCTGGCTGAGCAGCATTATGATAGT
CTAATCAAGCTTTTTCCGAACCTCTCTATTGCCATTCTGACGTCAGGTATGAAGGCTCCTGAAAAACAGACGGCTTTAGC
GGCCATTGCAGATGGGTCGGTGGATATGATTGTGGGGACCCACGCGCTCATTCAAGATGCTGTTCAATATCACAAATTAG
GGCTTGTTATCACAGATGAGCAACACCGATTTGGAGTGAAACAACGCCGTATTTTCCGCGAAAAAGGTGATAATCCAGAT
GTGCTCATGATGACGGCAACCCCTATTCCAAGGACATTAGCTATTACAGCTTATGGGGAAATGGATGTTTCTATTATTGA
TGAGTTACCAGCTGGTCGAAAACCTATTGTCACTCGTTGGGTTAAGCACCAACAATTGGATACCGTTTTGGCTTGGATGA
AAACGGAACTGGAGCAAGGGGCACAAGCCTATGTGATTTCGCCTTTGATTGAGGAATCTGAAGCTTTGGACCTTAAAAAT
GCTGTGGATTTGGAAGCTGAATTAAAAGCTTATTTTAAAGCATCAGCCCGTATAGCCCTTATGCATGGTAAGATGAAGGC
AGATGAAAAAGAAGCTATTATGCAGGCTTTCAAGGCTCAAGAGATTGATCTCTTGGTGTCAACAACAGTCATTGAAGTCG
GTGTCAATGTTCCCAACGCTAGTATCATGGTCATCATGGATGCGGACCGTTTTGGACTTAGTCAACTGCATCAGCTACGT
GGCCGTGTCGGACGTGGTCACAAGCAGTCCTATGCGATTCTAGTAGCTAATTCTAAAACAGAATCAGGAAAGGAACGCAT
GGCCATTATGACAACAACCAATGATGGTTTTGTTCTTGCTGAGGCAGATCTCAAAATGAGGGGCGCTGGCGAAATATTTG
GAACCCGCCAATCAGGTCTTCCCGAATTTAAAACCGCAGATATTGTAGAGGACTACGCGATTCTGGAAGAAGCTCGCAAA
GTAGCGACGATGATTACCTCAGAGCCTCACTGGGAGCAACAGGAAGAATGGCAGATGGTGCTGAATTACCTTGACACGAC
GGCAGACTTTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-664)

RecG wedge domain (RecG_wedge)

(6-157)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

68.703

100

0.687
  recG/mmsA Streptococcus pneumoniae R36A

68.703

100

0.687
  recG Bacillus subtilis subsp. subtilis str. 168

51.603

97.615

0.504
  recG Neisseria meningitidis strain C311

39.574

97.914

0.387

Multiple sequence alignment