Detailed information NTG0389474

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: F6Y24_RS18335
• Genome accession: NZ_CP044334
• Coordinates: 4132682..4134076 (-)
• Length: 464 a.a.
• NCBI ID: WP_051634076.1
• Uniprot ID: A0AAP4NHR5
• Organism: Xanthomonas arboricola pv. pruni strain 15-088
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4127682..4139076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6Y24_RS18320 (F6Y24_18320)	pilC	4128487..4129746 (-)	1260	WP_043088082.1	type II secretion system F family protein	Machinery gene
F6Y24_RS18325 (F6Y24_18325)	-	4130124..4130528 (+)	405	WP_043088084.1	pilin	-
F6Y24_RS18330 (F6Y24_18330)	pilB	4130713..4132446 (+)	1734	WP_039512338.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F6Y24_RS18335 (F6Y24_18335)	pilR	4132682..4134076 (-)	1395	WP_051634076.1	sigma-54 dependent transcriptional regulator	Regulator
F6Y24_RS18340 (F6Y24_18340)	-	4134269..4135882 (-)	1614	WP_039512337.1	HAMP domain-containing sensor histidine kinase	-
F6Y24_RS18345 (F6Y24_18345)	sucC	4136114..4137283 (+)	1170	WP_016901264.1	ADP-forming succinate--CoA ligase subunit beta	-
F6Y24_RS18350 (F6Y24_18350)	sucD	4137308..4138183 (+)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50118.51 Da
• Isoelectric Point: 6.5112

>NTDB_id=389474 F6Y24_RS18335 WP_051634076.1 4132682..4134076(-) (pilR) [Xanthomonas arboricola pv. pruni strain 15-088]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=389474 F6Y24_RS18335 WP_051634076.1 4132682..4134076(-) (pilR) [Xanthomonas arboricola pv. pruni strain 15-088]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGGCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGTCCATTTGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGTTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAAAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAATATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACACCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.261	99.138	0.627
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489