Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMBM04240196_RS07195 Genome accession   NC_017515
Coordinates   1382368..1382967 (-) Length   199 a.a.
NCBI ID   WP_002226439.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377368..1387967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS07180 (NMBM04240196_1269) dut 1378301..1378753 (-) 453 WP_014581478.1 dUTP diphosphatase -
  NMBM04240196_RS07185 (NMBM04240196_1270) - 1378896..1379321 (+) 426 Protein_1316 AzlC family ABC transporter permease -
  NMBM04240196_RS07190 (NMBM04240196_1271) pilX 1381890..1382363 (-) 474 WP_002258079.1 PilX family type IV pilin Machinery gene
  NMBM04240196_RS07195 (NMBM04240196_1272) pilK 1382368..1382967 (-) 600 WP_002226439.1 pilus assembly protein Machinery gene
  NMBM04240196_RS07200 (NMBM04240196_1273) pilJ 1382946..1383884 (-) 939 WP_014581479.1 PilW family protein Machinery gene
  NMBM04240196_RS07205 (NMBM04240196_1274) pilV 1383881..1384501 (-) 621 WP_014581480.1 type IV pilus modification protein PilV Regulator
  NMBM04240196_RS07210 (NMBM04240196_1275) pilH 1384531..1385199 (-) 669 WP_014581481.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBM04240196_RS07215 (NMBM04240196_1276) dnaB 1385508..1386914 (-) 1407 WP_002219448.1 replicative DNA helicase -
  NMBM04240196_RS07220 (NMBM04240196_1277) - 1387076..1387663 (+) 588 WP_002223431.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21975.90 Da        Isoelectric Point: 6.3884

>NTDB_id=38901 NMBM04240196_RS07195 WP_002226439.1 1382368..1382967(-) (pilK) [Neisseria meningitidis M04-240196]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNTNNGNEEVFDNIVVQGKPTVEAVKRSCTANSTNLCIDNKGMEYKKGTRSVSKMPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=38901 NMBM04240196_RS07195 WP_002226439.1 1382368..1382967(-) (pilK) [Neisseria meningitidis M04-240196]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGTTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAATT
CTACCAACCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.905

Multiple sequence alignment