Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   LPB220_RS06865 Genome accession   NZ_CP044230
Coordinates   1304544..1306529 (-) Length   661 a.a.
NCBI ID   WP_150906286.1    Uniprot ID   A0A5J6LNP1
Organism   Streptococcus sp. LPB0220     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299544..1311529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS06855 (LPB220_06860) trxA 1300983..1301297 (-) 315 WP_003002728.1 thioredoxin -
  LPB220_RS06860 (LPB220_06865) - 1301395..1304424 (-) 3030 WP_150906285.1 CocE/NonD family hydrolase -
  LPB220_RS06865 (LPB220_06870) amiA 1304544..1306529 (-) 1986 WP_150906286.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS06870 (LPB220_06875) - 1306924..1307961 (-) 1038 WP_150906287.1 M42 family metallopeptidase -
  LPB220_RS10935 (LPB220_06880) - 1308158..1308544 (-) 387 Protein_1264 NADAR family protein -
  LPB220_RS06880 (LPB220_06885) - 1308823..1309419 (-) 597 WP_070594964.1 response regulator transcription factor -
  LPB220_RS06885 (LPB220_06890) - 1309400..1310974 (-) 1575 WP_070587247.1 ATP-binding protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73558.19 Da        Isoelectric Point: 5.3203

>NTDB_id=388998 LPB220_RS06865 WP_150906286.1 1304544..1306529(-) (amiA) [Streptococcus sp. LPB0220]
MKKRNVIALAGVALLSAGILAACSGGSKSSSSSNGQKFSYVYETEPENLNYITSGKAATHDITGNLIDGLFENDKYGNLI
PSLAKDWTVSQDGLTYTYKLRDDAKWYDSEGEEYADVTAKDFVTGIKYAADNKSEMLYIIQDSIKGLNDYVSGKNKDFSA
VGVKAVDDHTLQITLNQPESYWNSKLTLGITFPVNEKFVKSKGDKFAQASDTSSLLYNGPYILKSFTSKSSIEMTKNENY
WDKDKVYISDVKLEFYDGQDQSKLAKSFGENALSLAKLFPTGSGYSEQAKEFKDEITYTPQDAASYVIGTNIDRQSYKHT
AKKTDEEKQSTKKALLNKDFRQAISFAFNREAYAAQLNGKDGASKIIRNLYIPPTFVQADGKTFGEMVKTQLDTYGDEWK
STKLDDGQNGLFDAKKAKEEFAKAKTALEAEGVKFPIHIDMPVDQTTPSRVQRVQSFKQSVEEALGKENVIIDIQMLSKE
DLQNVTLFAPNAAGEDWDLSDNVGWSPDYQDPSTYMDILKASSGENTKTFLGFDPSENNEAAKKVGLYDFEKMIKDAGAE
TQDVNKRYEKYAAAQAWLTDSALVMPTSSSTGRPFLTRIEPFSAPFAWTGGKGKDHVIYKGMKLQDKAVTSADYNKALEK
WQKEQAESNKKAQEDLKKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=388998 LPB220_RS06865 WP_150906286.1 1304544..1306529(-) (amiA) [Streptococcus sp. LPB0220]
ATGAAAAAAAGAAATGTCATTGCACTTGCGGGAGTTGCCCTCCTTTCAGCAGGTATCCTAGCAGCTTGTTCGGGTGGTTC
TAAATCATCTAGCTCAAGCAACGGTCAAAAATTCTCATATGTCTATGAGACTGAGCCAGAAAACCTAAACTATATCACAT
CTGGTAAAGCAGCAACCCACGATATCACTGGAAACTTGATTGATGGTTTGTTTGAAAATGATAAATACGGGAACTTGATT
CCATCTCTTGCAAAAGATTGGACAGTTTCGCAAGATGGCTTGACTTATACTTATAAACTTCGTGACGATGCTAAATGGTA
TGATTCAGAAGGCGAAGAGTATGCGGATGTAACAGCTAAAGATTTCGTCACAGGGATCAAATATGCGGCTGATAACAAAT
CAGAAATGCTCTACATCATCCAAGATTCTATCAAAGGCTTGAATGACTACGTCAGTGGTAAAAATAAAGATTTCTCAGCT
GTAGGAGTAAAAGCAGTTGATGATCATACCCTTCAAATCACTTTGAACCAACCAGAATCTTACTGGAACTCTAAATTGAC
TCTTGGGATCACTTTCCCTGTCAACGAAAAATTCGTGAAATCAAAAGGGGATAAATTCGCTCAAGCAAGTGATACTAGCT
CCCTTCTTTACAATGGTCCTTACATCTTGAAGAGCTTTACTTCAAAATCTTCTATCGAAATGACCAAGAATGAAAACTAC
TGGGATAAAGACAAGGTCTACATCTCAGATGTGAAATTGGAATTCTACGATGGACAAGACCAAAGTAAATTGGCTAAATC
ATTCGGTGAAAATGCTCTTAGCTTAGCTAAACTCTTCCCAACTGGATCTGGATACTCAGAGCAAGCTAAAGAATTCAAAG
ACGAAATCACCTACACTCCTCAAGATGCTGCTTCTTATGTTATTGGTACCAACATCGACCGTCAATCTTACAAACACACA
GCTAAGAAAACCGATGAAGAAAAACAATCTACTAAGAAAGCTCTCTTGAACAAGGACTTCCGTCAAGCGATCAGCTTTGC
CTTCAACCGTGAAGCGTATGCTGCTCAATTGAACGGAAAAGACGGAGCAAGCAAGATCATCCGTAACCTCTACATTCCAC
CAACATTTGTCCAAGCTGATGGTAAGACCTTCGGTGAAATGGTAAAAACACAATTGGATACCTATGGAGATGAGTGGAAA
TCTACTAAACTAGATGATGGTCAAAACGGTCTCTTCGATGCGAAGAAAGCGAAGGAAGAGTTTGCAAAAGCGAAGACTGC
CTTGGAAGCAGAAGGTGTGAAATTCCCAATTCACATCGATATGCCTGTGGACCAAACCACTCCATCAAGAGTTCAACGGG
TGCAATCTTTCAAACAATCAGTTGAAGAAGCGCTTGGTAAAGAAAATGTCATCATCGATATCCAAATGCTTTCGAAAGAA
GACCTTCAAAATGTGACCCTCTTTGCGCCAAATGCGGCTGGCGAAGACTGGGATCTCTCTGATAATGTTGGATGGAGCCC
TGACTACCAAGACCCATCAACTTACATGGATATCTTGAAAGCTTCATCTGGTGAAAATACTAAGACTTTCCTTGGATTTG
ACCCAAGTGAAAACAATGAAGCAGCTAAAAAAGTTGGTCTGTACGACTTTGAAAAGATGATCAAAGATGCTGGTGCAGAA
ACACAAGACGTCAACAAACGCTATGAAAAATATGCGGCTGCGCAAGCTTGGTTGACTGATAGCGCCCTCGTTATGCCAAC
TTCTTCATCAACTGGACGTCCATTCTTGACACGTATCGAACCATTCTCAGCTCCATTTGCATGGACTGGTGGTAAAGGAA
AAGACCACGTGATCTACAAAGGAATGAAACTCCAAGACAAAGCTGTGACAAGTGCTGATTACAACAAAGCCCTTGAAAAA
TGGCAAAAAGAACAAGCAGAGTCAAATAAAAAAGCACAAGAAGATCTTAAGAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LNP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.1

100

0.572
  amiA3 Streptococcus thermophilus LMD-9

56.949

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

56.495

100

0.566

Multiple sequence alignment