Detailed information NTG0388997

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: LPB220_RS06055
• Genome accession: NZ_CP044230
• Coordinates: 1147211..1148443 (-)
• Length: 410 a.a.
• NCBI ID: WP_150906152.1
• Uniprot ID: A0A5J6LPN2
• Organism: Streptococcus sp. LPB0220
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1142211..1153443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPB220_RS06020 (LPB220_06025)	-	1142404..1142856 (-)	453	WP_003007432.1	hypothetical protein	-
LPB220_RS06025 (LPB220_06030)	-	1143006..1143449 (-)	444	WP_150906144.1	hypothetical protein	-
LPB220_RS06030 (LPB220_06035)	rplL	1143609..1143977 (-)	369	WP_003001622.1	50S ribosomal protein L7/L12	-
LPB220_RS06035 (LPB220_06040)	rplJ	1144053..1144553 (-)	501	WP_003001722.1	50S ribosomal protein L10	-
LPB220_RS06040 (LPB220_06045)	-	1144787..1145584 (-)	798	WP_150906146.1	formate/nitrite transporter family protein	-
LPB220_RS06045 (LPB220_06050)	-	1145743..1146447 (-)	705	WP_150906148.1	glucosaminidase domain-containing protein	-
LPB220_RS06050 (LPB220_06055)	yihA	1146597..1147199 (-)	603	WP_150906150.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
LPB220_RS06055 (LPB220_06060)	clpX	1147211..1148443 (-)	1233	WP_150906152.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
LPB220_RS06065 (LPB220_06070)	-	1148652..1149161 (-)	510	WP_049507821.1	dihydrofolate reductase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45690.22 Da
• Isoelectric Point: 4.4242

>NTDB_id=388997 LPB220_RS06055 WP_150906152.1 1147211..1148443(-) (clpX) [Streptococcus sp. LPB0220]
MPTNQNNDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREDETDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADAKALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEIPSQEDVKLVRITKEAVD
GTEKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=388997 LPB220_RS06055 WP_150906152.1 1147211..1148443(-) (clpX) [Streptococcus sp. LPB0220]
ATGCCAACGAATCAAAACAATGATATGATGGTTTATTGCTCATTTTGCGGAAAGAGTCAAGATGAAGTCCAAAAAATCAT
TGCAGGAAACAATGCGTTTATCTGTAATGAATGTGTAGAATTAGCTCAAGAAATCATCCGCGAGGAGCTTGCTGAAGAAG
TCCTAGCTGACCTTAGTGAAGTCCCAAAACCAATCGAATTGCTCAATATCTTGAACCACTATGTCATCGGTCAAGATCGG
GCTAAACGTGCCCTTGCAGTAGCGGTATACAACCACTACAAACGCATTAACTTCCACGATACACGCGAAGATGAGACGGA
TGTTGAATTGCAAAAATCAAACATCCTCATGATTGGACCTACTGGTTCAGGAAAGACTTTCTTGGCCCAAACCTTGGCTC
GTAGCCTGAATGTTCCATTTGCTATTGCAGATGCAAAAGCTTTAACTGAAGCTGGTTATGTGGGTGAAGACGTTGAAAAT
ATTCTCTTAAAACTTCTTCAGGCAGCGGATTTCAATATTGAGCGTGCAGAACGTGGCATCATCTATGTCGATGAAATTGA
TAAGATCGCTAAGAAAAGTGAAAATGTCTCGATCACACGTGACGTTTCTGGTGAAGGAGTGCAACAAGCCCTCTTGAAAA
TTATCGAAGGGACAGTTGCTAGTGTTCCACCTCAAGGGGGACGCAAACACCCTCAACAAGAGATGATCCAAGTGGACACC
AAGAACATCCTCTTTATCGTAGGAGGAGCCTTTGATGGGATCGAAGAAATTGTTAAGCAACGTCTCGGTGAAAAAGTCAT
CGGTTTCGGTAAGAACAATAAAGCTATAGATGAATCAAGCTCTTACATGCAAGAAATCGTTGCGGAAGATATTCAAAAAT
TTGGGATTATCCCAGAATTGATCGGACGTCTTCCAGTCTTTGCTGCTCTTGAGCAATTGACAGTTGACGATCTTGTCCGT
ATCTTGAAAGAGCCACGCAATGCTCTGGTAAAACAATACCAAACCTTACTCTCTTATGATAATGTTGAATTGGAATTTGA
TGACGAAGCACTTCAAGAGATTGCGAATAAAGCCATCGAAAGAAAAACAGGAGCTCGTGGACTTCGTTCGATTATCGAAG
AAACCATGATGGATGTCATGTTTGAAATTCCAAGTCAAGAAGATGTCAAACTTGTTCGAATCACAAAAGAAGCTGTTGAC
GGAACAGAAAAACCAATTCTTGAAACAGCCTAG

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

3D structure

• AlphaFold DB: A0A5J6LPN2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.098	100	0.861
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.463	98.049	0.563