Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB220_RS03930 Genome accession   NZ_CP044230
Coordinates   729818..731785 (+) Length   655 a.a.
NCBI ID   WP_150905675.1    Uniprot ID   A0A5J6LL64
Organism   Streptococcus sp. LPB0220     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 722856..733436 729818..731785 within 0


Gene organization within MGE regions


Location: 722856..733436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS03885 (LPB220_03885) - 722856..724031 (+) 1176 WP_225305927.1 ABC transporter permease -
  LPB220_RS03890 (LPB220_03890) - 724157..724654 (+) 498 WP_150905667.1 NUDIX hydrolase -
  LPB220_RS03895 (LPB220_03895) - 724651..725091 (+) 441 WP_150905669.1 ASCH domain-containing protein -
  LPB220_RS03900 (LPB220_03900) glmU 725494..726873 (+) 1380 WP_150905670.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  LPB220_RS03905 (LPB220_03905) - 726883..727428 (+) 546 WP_003002456.1 NUDIX hydrolase -
  LPB220_RS03910 (LPB220_03910) macP 727440..727775 (+) 336 WP_070594427.1 cell wall synthase accessory phosphoprotein MacP -
  LPB220_RS03915 (LPB220_03915) - 727800..728492 (+) 693 WP_150905672.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  LPB220_RS03920 (LPB220_03920) - 728515..728823 (+) 309 WP_049497216.1 hypothetical protein -
  LPB220_RS03925 (LPB220_03925) nth 728928..729551 (+) 624 WP_150905674.1 endonuclease III -
  LPB220_RS03930 (LPB220_03930) amiA3 729818..731785 (+) 1968 WP_150905675.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS03935 (LPB220_03935) - 731977..732069 (-) 93 Protein_706 VOC family protein -
  LPB220_RS03940 (LPB220_03940) - 732177..732815 (+) 639 WP_023917595.1 hypothetical protein -
  LPB220_RS03945 (LPB220_03945) - 733050..733436 (-) 387 WP_004219638.1 bleomycin resistance protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72141.40 Da        Isoelectric Point: 5.4796

>NTDB_id=388986 LPB220_RS03930 WP_150905675.1 729818..731785(+) (amiA3) [Streptococcus sp. LPB0220]
MKAKKLLALAGVSVAGAFLLAACGGGSSNQATYSFVYSADPNTLDYIAATRTTTSDVTSNLVDGLLENDRYGNFVPSLAE
DWTVSEDGLTYTYKLRKDAKWYTSEGEEYGAVTAQDFVTGIKHAVESKSEGLFLIQNSIKGLDAYVKGETKDFNTVGVKA
LDDHTIQYTLVRPESFWNSKTTSGVLFPVNADFLKSQGKDFGSLKPSSILYNGPYYLKSLTSKSEIELVKNKDYYDAKNV
HIDNVKLTFNDGSNPDSIIKNFEKGQYSFASVMPNSSTYKSVKKNFGDNIVYGLQLGTSYYLGFNLDRQKYDHTAKTTDE
QKASTKKAILNKDFRQAVNFGFDRKSYAAQVSGADVAENTLRSTLVPPTYVQVNGEDFGKVVEKQLVTYGDQWKGVSLDD
GQTSLYSPEKAKASFAKAKAELQKQGVQFPIHLDYIVSQVDNSMVQQASSFKQSVESALGADNVVVDLQKVSDDDFQNIT
YFSDTAAARDYDISGGGWAPDYQDPSTYLESISPVNGSVFYYLGIDAGSNNPAIATVGLDQYANMLKDADAELLDQGKRY
EKYAAAQAWLTDSSITLPTVSNGGAPMLQRTVPYSRAASWVGTKGTGTFYKYLEMSKDVVTTKDFNKAKEEWLKKKAESN
KKAQEDLKDHIEKKK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=388986 LPB220_RS03930 WP_150905675.1 729818..731785(+) (amiA3) [Streptococcus sp. LPB0220]
ATGAAAGCAAAAAAACTGTTAGCTCTTGCAGGAGTTTCTGTTGCAGGTGCCTTTCTTTTAGCAGCATGTGGCGGTGGTAG
TAGCAATCAAGCAACTTACTCATTCGTCTATTCAGCGGATCCAAATACCTTAGATTACATCGCTGCAACTCGTACAACAA
CTTCAGATGTCACAAGTAACCTTGTAGATGGTCTTCTTGAAAACGACCGATACGGAAACTTTGTGCCAAGTCTAGCAGAA
GATTGGACTGTCTCTGAAGATGGATTAACCTATACTTACAAACTTCGTAAGGATGCCAAATGGTATACGAGTGAAGGAGA
AGAATATGGTGCTGTAACGGCTCAAGACTTTGTTACAGGAATCAAACACGCGGTTGAGTCTAAATCAGAAGGTCTCTTCT
TGATTCAAAATTCGATCAAAGGTTTGGATGCCTACGTAAAAGGGGAAACCAAAGACTTTAACACGGTTGGAGTGAAAGCT
TTAGATGACCACACCATCCAATATACTTTAGTTCGTCCAGAAAGCTTCTGGAACTCAAAAACAACCTCAGGTGTTCTTTT
CCCAGTCAATGCGGATTTCTTGAAATCTCAAGGAAAAGATTTTGGTTCTTTGAAACCCAGCAGCATCTTATACAATGGTC
CTTATTACTTGAAATCATTGACTTCAAAATCTGAGATTGAATTGGTCAAGAACAAAGACTATTACGATGCGAAAAATGTT
CATATCGACAATGTCAAATTAACCTTTAACGATGGATCAAACCCTGATTCTATCATTAAGAACTTTGAAAAAGGTCAATA
TTCCTTTGCCTCTGTTATGCCAAACAGCTCGACTTACAAGAGTGTCAAGAAAAACTTTGGCGACAACATTGTCTACGGTT
TGCAATTGGGAACATCCTACTACCTTGGATTCAACTTGGACCGTCAAAAATATGACCACACAGCCAAAACAACGGATGAA
CAAAAAGCCTCTACCAAGAAAGCAATCTTGAACAAGGACTTCCGTCAAGCGGTGAACTTTGGTTTTGACCGCAAATCTTA
TGCGGCACAAGTTTCAGGGGCTGATGTGGCTGAAAATACCCTTCGTAGTACCTTGGTGCCACCAACTTATGTCCAAGTCA
ATGGAGAAGACTTTGGTAAAGTCGTTGAAAAACAATTGGTTACCTACGGAGACCAATGGAAGGGTGTGAGCCTGGACGAT
GGTCAAACGAGCCTTTACAGCCCAGAAAAAGCCAAAGCTTCCTTTGCGAAAGCCAAAGCTGAATTGCAAAAACAAGGCGT
TCAATTCCCAATTCATTTGGACTACATTGTTAGCCAAGTGGACAACAGCATGGTCCAACAAGCTAGCTCCTTCAAACAAT
CTGTAGAGTCAGCGCTTGGTGCAGACAATGTCGTTGTGGACCTTCAAAAGGTATCGGATGATGATTTCCAAAATATCACC
TACTTCAGCGATACAGCGGCTGCGAGAGATTACGATATCTCAGGCGGTGGTTGGGCTCCTGACTACCAAGACCCATCGAC
TTATCTTGAAAGTATCAGCCCAGTAAATGGTTCTGTCTTCTACTATCTTGGTATTGATGCAGGTTCAAACAATCCAGCCA
TTGCAACAGTTGGTTTGGATCAATACGCTAACATGTTGAAAGACGCCGATGCTGAATTGTTGGATCAAGGAAAACGCTAT
GAAAAATATGCAGCAGCGCAAGCTTGGTTGACAGATAGCTCGATTACGCTTCCAACTGTCTCAAATGGTGGTGCTCCAAT
GCTTCAACGGACCGTGCCATACAGCCGTGCTGCTTCATGGGTAGGTACTAAAGGAACAGGAACCTTCTACAAATACCTTG
AAATGTCGAAAGATGTTGTCACCACAAAAGACTTTAACAAGGCCAAAGAAGAATGGTTGAAGAAAAAAGCAGAATCCAAT
AAAAAAGCTCAAGAAGATCTCAAAGATCACATTGAGAAGAAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LL64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.485

100

0.539
  amiA3 Streptococcus thermophilus LMG 18311

53.333

100

0.537
  amiA Streptococcus salivarius strain HSISS4

52.352

100

0.527

Multiple sequence alignment