Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   LPB220_RS03840 Genome accession   NZ_CP044230
Coordinates   714984..716948 (-) Length   654 a.a.
NCBI ID   WP_150905657.1    Uniprot ID   A0A5J6LMU2
Organism   Streptococcus sp. LPB0220     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 709984..721948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS03820 (LPB220_03820) - 710050..711168 (+) 1119 WP_150905653.1 DUF4767 domain-containing protein -
  LPB220_RS03825 (LPB220_03825) - 711382..711945 (+) 564 WP_150905655.1 hypothetical protein -
  LPB220_RS03830 (LPB220_03830) - 712121..712888 (+) 768 WP_031576714.1 ABC transporter ATP-binding protein -
  LPB220_RS03835 (LPB220_03835) - 712881..714884 (+) 2004 WP_129299576.1 FtsX-like permease family protein -
  LPB220_RS03840 (LPB220_03840) amiA 714984..716948 (-) 1965 WP_150905657.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS03845 (LPB220_03845) - 717203..717529 (+) 327 WP_150905659.1 PadR family transcriptional regulator -
  LPB220_RS03850 (LPB220_03850) - 717526..718212 (+) 687 WP_225305926.1 hypothetical protein -
  LPB220_RS03855 (LPB220_03855) - 718323..719153 (+) 831 WP_150905661.1 hypothetical protein -
  LPB220_RS03865 (LPB220_03865) - 719388..720779 (+) 1392 WP_150905663.1 APC family permease -
  LPB220_RS03870 (LPB220_03870) - 720885..721121 (+) 237 WP_000141913.1 DUF2829 domain-containing protein -
  LPB220_RS03875 (LPB220_03875) - 721114..721812 (+) 699 WP_150905665.1 3-oxoacyl-ACP reductase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72464.45 Da        Isoelectric Point: 5.0271

>NTDB_id=388985 LPB220_RS03840 WP_150905657.1 714984..716948(-) (amiA) [Streptococcus sp. LPB0220]
MKKSKLALLAGVAAASTLFLAACGSSSNASKGTTYNYVYGTDPDSLNYLTSNRSTTSDITTNLVDGLFENDQYGNLVPAL
AEDWSVSKDGLTYTYKLRKDAKWYDSEGNEYADVTAQDFVTSLKYVADKKSDALYLVQNSVKGLDDYVNGKTKDFSTVGV
KAVDDHTLQYTLNQPESFWNSKLTTATMMPVNEKFLESAGKDFGSVKPNGILYNGPYILKSFTSKSQIELDKNPDYYDKK
NVHIDTVKLTYFDGSDQDYLARNFSDGNLSTARLFPTSSTYSTIEKKFKDNIVYTPQDSTVYYAYFNVNRQNYGHTKKTS
DEQKNSTKTALQNKNFRQALNFALDRTSYSAQVNGKDGASKTLRTLLVPPTFVQANGKDFGTLVEEKLAATGDEWKGVSF
ADAQDSLHNADKAKAELEKAKSELQSQGVQFPIHIDYVVDQSSNALVQQADSMKSSIETALGKDNVVIDVQKLSTDDADN
ATYFAQSPDQKDFDMDITGWGPDFQDPSTYLDILNPTDGSTLTGMGLDPKKDQALIEKIGLNQYKELLDAANAEKLDTNA
RYEKYAAAQAWLTENAMVLPIYSKGGVPSITKVTPFSAANSAIGIKGESSFFKYQKVQDKTVTTADYEKAYKNWLKEKEE
SNKKAQEELAKHVK

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=388985 LPB220_RS03840 WP_150905657.1 714984..716948(-) (amiA) [Streptococcus sp. LPB0220]
ATGAAAAAATCGAAGCTTGCTCTTTTAGCAGGTGTCGCCGCGGCTTCAACGCTTTTCCTTGCTGCATGTGGCTCATCTTC
TAATGCGTCAAAAGGGACTACTTACAACTACGTGTATGGTACAGACCCTGATTCCTTGAACTATTTGACTTCAAATCGTT
CAACTACAAGCGACATTACAACCAACTTGGTCGATGGTTTGTTTGAAAACGATCAATACGGTAACTTAGTGCCTGCTCTT
GCTGAGGACTGGTCCGTTTCAAAAGACGGTCTGACTTATACTTACAAGCTTCGAAAAGATGCGAAGTGGTATGATTCAGA
AGGAAATGAATACGCTGACGTCACTGCACAAGATTTCGTGACATCTCTAAAATACGTAGCAGATAAAAAATCGGATGCTC
TTTACTTGGTTCAAAACTCGGTCAAAGGCTTGGATGACTATGTAAACGGGAAAACCAAAGACTTCTCAACTGTTGGGGTA
AAAGCTGTTGATGATCACACTCTTCAATACACTTTGAACCAACCAGAATCTTTCTGGAATTCTAAATTGACGACTGCTAC
CATGATGCCAGTTAATGAAAAATTCTTGGAATCAGCTGGGAAAGACTTTGGTAGCGTGAAACCAAATGGTATCCTCTACA
ATGGTCCATACATTTTGAAATCCTTCACTTCAAAATCACAAATCGAGTTGGATAAAAACCCTGATTACTACGACAAGAAA
AATGTTCACATCGATACGGTTAAATTGACTTACTTCGATGGATCTGACCAAGACTATCTTGCTCGTAACTTCTCAGATGG
GAACCTATCTACTGCTCGTCTCTTCCCAACAAGCTCAACTTACAGCACAATTGAGAAGAAATTCAAGGATAACATCGTTT
ATACACCTCAAGATTCTACTGTTTACTACGCTTACTTCAACGTTAACCGTCAAAACTACGGTCATACGAAGAAGACGTCT
GATGAGCAAAAGAACAGTACTAAGACAGCTCTTCAAAACAAGAATTTCCGTCAAGCCTTGAACTTTGCTTTAGACAGAAC
TTCCTACAGCGCTCAAGTTAACGGGAAAGACGGAGCATCAAAAACTCTACGTACCCTTCTAGTTCCACCAACATTTGTGC
AAGCCAACGGAAAAGACTTCGGTACGCTCGTTGAAGAAAAACTTGCCGCAACAGGAGATGAGTGGAAAGGTGTTAGCTTT
GCTGACGCGCAAGATAGCTTGCATAATGCGGATAAAGCCAAAGCGGAACTTGAAAAAGCGAAATCTGAATTGCAATCACA
AGGTGTTCAATTCCCAATCCATATCGACTATGTCGTAGACCAATCTTCTAATGCTCTTGTCCAACAAGCAGACTCTATGA
AGAGTTCTATTGAAACAGCTCTTGGTAAAGACAATGTCGTGATCGATGTACAAAAATTGTCTACAGACGATGCAGACAAC
GCTACTTACTTCGCCCAATCACCAGACCAAAAAGACTTTGATATGGATATCACAGGTTGGGGACCTGACTTCCAAGATCC
ATCTACTTACTTGGATATCTTGAACCCAACAGATGGATCAACCTTGACTGGTATGGGACTTGATCCTAAGAAAGACCAAG
CTCTCATCGAAAAAATTGGTTTGAACCAATACAAAGAATTGTTGGATGCTGCTAATGCTGAAAAATTGGATACCAATGCG
CGTTATGAAAAATACGCTGCTGCCCAAGCTTGGTTGACTGAAAACGCAATGGTACTTCCAATCTACTCTAAGGGTGGAGT
TCCATCTATCACGAAGGTAACGCCATTCTCAGCAGCAAATTCTGCAATTGGTATTAAAGGTGAATCAAGCTTCTTCAAAT
ACCAAAAAGTTCAAGATAAGACAGTTACAACTGCTGATTACGAAAAAGCTTATAAGAATTGGTTGAAAGAAAAAGAAGAA
TCAAACAAAAAAGCGCAAGAAGAACTTGCAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LMU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.839

100

0.572
  amiA3 Streptococcus thermophilus LMG 18311

55.539

100

0.56
  amiA3 Streptococcus thermophilus LMD-9

55.539

100

0.56

Multiple sequence alignment