Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   LPB220_RS01535 Genome accession   NZ_CP044230
Coordinates   263986..265962 (+) Length   658 a.a.
NCBI ID   WP_150905198.1    Uniprot ID   A0A5J6LKK3
Organism   Streptococcus sp. LPB0220     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258986..270962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS01520 (LPB220_01520) - 259047..260942 (+) 1896 WP_150905194.1 M13 family metallopeptidase -
  LPB220_RS01525 (LPB220_01525) - 261348..262439 (+) 1092 WP_061591484.1 glycerol dehydrogenase -
  LPB220_RS01530 (LPB220_01530) - 262498..263820 (-) 1323 WP_150905196.1 DUF1958 domain-containing protein -
  LPB220_RS01535 (LPB220_01535) amiA3 263986..265962 (+) 1977 WP_150905198.1 peptide ABC transporter substrate-binding protein Regulator
  LPB220_RS01540 (LPB220_01540) leuS 266086..268587 (+) 2502 WP_150905200.1 leucine--tRNA ligase -
  LPB220_RS01545 (LPB220_01545) - 268770..269225 (+) 456 WP_150905202.1 MarR family winged helix-turn-helix transcriptional regulator -
  LPB220_RS10740 - 269282..270511 (+) 1230 WP_191904614.1 acyl-CoA thioesterase/BAAT N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72689.71 Da        Isoelectric Point: 5.3905

>NTDB_id=388968 LPB220_RS01535 WP_150905198.1 263986..265962(+) (amiA3) [Streptococcus sp. LPB0220]
MNKGKVLLATSALLLSAGVLAACSGGKSSSSGGQTYSYVYTQDPDTLDYSISNKKSTSEFTGNAIDGLLEVDKYGNLIPS
LAKDWTVSKDGLTYTYKLRKGVKWMTSEGEEYGEVKAKDFVTGLKHAADKKSQAIYLVQKSVKGLDDYVSGKTSDFSTVG
VKAIDDYTVQYTLSQPESFWNSKTTMGILMPVNEEFLKSKGDDYGQGTSPSSILYCGPYLIKSITSKSSATLEKNPTYWD
ADNVKISKVKLTYYDGQDSESLIRGFDKGDYTVARVFPSGSNYKSVEKKHKDDIVFSDQGSSTYNLSFNIDRQSYEITAK
TTDAQKTSTKKAILNKDFRQAIMFAFNRKAYVAQANGEAAANKVIRNTFTPPNFVQINGQQFGDAVEKDLEAYGDEWKGV
SVADGKDTLYNPTKAKEEFAKAKADLQAQGVEFPIHLDLPTSSTYTEGIKQAQSFKQSIESTLGAENIVIDLKMISDDDL
QRVTYFAENASQQDWDLNNNLGWGPDYTDPSSYIDITSGKSGENANAYFGFDAGTNNAAAKAAGFDEYDQLIEDAQKETT
DVNKRYEKYAAAQAWLTDSALLIPIHSDGASPGVRKTVPYSAAFAWTGHKGQSFNYKYLEVQDKVVSAKDYDKARDQWKK
EKEKSNKKAQEELEKHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=388968 LPB220_RS01535 WP_150905198.1 263986..265962(+) (amiA3) [Streptococcus sp. LPB0220]
ATGAATAAAGGGAAGGTACTCTTAGCTACCAGCGCTCTGCTTTTATCAGCTGGTGTACTGGCAGCCTGCTCAGGAGGGAA
ATCTAGTAGCTCTGGTGGTCAGACATATAGCTATGTCTATACCCAGGATCCAGATACTCTCGACTATTCGATTTCTAATA
AAAAATCGACTTCCGAGTTTACAGGAAATGCGATAGATGGCTTGTTGGAAGTGGACAAGTACGGGAATTTGATCCCATCG
CTTGCTAAAGACTGGACTGTTTCCAAGGATGGCTTGACCTATACTTATAAACTCCGTAAAGGGGTCAAATGGATGACTTC
TGAAGGGGAAGAATATGGAGAAGTCAAGGCCAAAGACTTTGTCACAGGTCTCAAGCACGCAGCAGACAAGAAATCACAAG
CGATTTACTTGGTCCAAAAATCTGTCAAAGGCTTGGATGATTATGTTTCAGGGAAGACATCTGATTTCTCAACTGTTGGT
GTGAAAGCTATTGACGATTACACAGTCCAATATACCTTGAGCCAACCAGAAAGTTTCTGGAATTCTAAGACTACGATGGG
GATCTTGATGCCGGTCAACGAAGAATTCCTGAAATCTAAAGGAGATGACTATGGTCAAGGAACTTCTCCGTCTAGTATCC
TATATTGCGGTCCTTATTTGATCAAATCCATCACTTCTAAATCTTCTGCGACCTTGGAAAAGAACCCAACTTACTGGGAT
GCGGATAATGTCAAGATCAGTAAAGTGAAGTTGACCTATTATGATGGACAAGACTCAGAATCCTTGATCCGTGGATTTGA
TAAAGGCGACTATACAGTTGCCCGTGTCTTCCCAAGTGGCTCTAACTATAAGAGTGTAGAGAAGAAGCACAAAGACGATA
TCGTCTTTAGTGACCAAGGTTCCTCTACCTATAACCTTTCCTTCAACATTGACCGTCAGTCTTATGAAATTACTGCTAAA
ACCACAGATGCTCAAAAGACTTCGACCAAGAAAGCAATCTTAAATAAGGACTTCCGTCAAGCCATTATGTTTGCCTTCAA
CCGTAAGGCATATGTAGCTCAGGCGAACGGGGAAGCAGCTGCCAATAAGGTCATCCGTAATACCTTTACGCCACCAAACT
TTGTTCAAATCAATGGCCAACAATTTGGGGATGCAGTAGAAAAAGACTTGGAAGCTTATGGGGATGAATGGAAAGGGGTC
TCTGTCGCAGATGGAAAAGATACCCTCTACAATCCAACCAAGGCCAAAGAAGAGTTTGCCAAAGCCAAGGCAGATTTGCA
GGCTCAAGGAGTTGAATTCCCAATTCATTTGGATCTTCCAACTTCTTCAACTTATACAGAAGGAATCAAACAAGCCCAAT
CCTTCAAACAGTCGATCGAGTCAACTTTAGGAGCAGAAAATATTGTTATTGATCTGAAAATGATCTCAGATGATGATCTT
CAACGGGTCACCTACTTTGCTGAAAATGCTTCGCAACAAGACTGGGATCTAAACAATAACTTGGGTTGGGGACCAGACTA
TACGGACCCATCTTCTTACATTGATATCACTAGTGGTAAATCTGGCGAAAATGCCAATGCCTACTTTGGATTCGATGCTG
GTACCAACAATGCGGCCGCAAAAGCAGCTGGTTTTGATGAATACGATCAATTAATTGAGGATGCTCAAAAAGAAACCACA
GATGTGAACAAGCGTTATGAAAAATATGCTGCTGCTCAAGCTTGGTTGACCGATAGTGCCCTCTTAATTCCGATCCATTC
AGATGGAGCTTCTCCAGGCGTTCGTAAGACTGTACCATACTCTGCAGCCTTTGCTTGGACAGGCCACAAGGGTCAATCCT
TCAACTATAAATATTTGGAAGTTCAAGACAAGGTCGTATCGGCTAAAGACTACGACAAAGCGCGTGATCAATGGAAGAAA
GAAAAAGAAAAATCCAATAAAAAAGCGCAAGAAGAACTTGAAAAGCATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LKK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

56.515

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

56.364

100

0.565
  amiA Streptococcus salivarius strain HSISS4

56.146

100

0.562

Multiple sequence alignment