Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   F5989_RS07455 Genome accession   NZ_CP044221
Coordinates   1503512..1503805 (+) Length   97 a.a.
NCBI ID   WP_002263439.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCH105     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498512..1508805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS07430 (F5989_07565) - 1500414..1500797 (+) 384 WP_002264248.1 DUF1033 family protein -
  F5989_RS07435 (F5989_07570) comYA 1500927..1501868 (+) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  F5989_RS07440 (F5989_07575) comYB 1501804..1502835 (+) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  F5989_RS07445 (F5989_07580) comYC 1502835..1503149 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  F5989_RS07450 (F5989_07585) comYD 1503136..1503540 (+) 405 WP_002264246.1 competence type IV pilus minor pilin ComGD Machinery gene
  F5989_RS07455 (F5989_07590) comYE 1503512..1503805 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  F5989_RS07460 (F5989_07595) comYF 1503792..1504226 (+) 435 WP_061046398.1 competence type IV pilus minor pilin ComGF Machinery gene
  F5989_RS07465 (F5989_07600) comYG 1504204..1504593 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  F5989_RS07470 (F5989_07605) comYH 1504648..1505601 (+) 954 WP_002263442.1 class I SAM-dependent methyltransferase Machinery gene
  F5989_RS07475 (F5989_07610) - 1505660..1506859 (+) 1200 WP_002263443.1 acetate kinase -
  F5989_RS07480 (F5989_07615) - 1507412..1507657 (+) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  F5989_RS07485 (F5989_07620) - 1507626..1508066 (+) 441 WP_002263445.1 hypothetical protein -
  F5989_RS07490 (F5989_07625) - 1508119..1508781 (+) 663 WP_002266816.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 11001.91 Da        Isoelectric Point: 9.4908

>NTDB_id=388857 F5989_RS07455 WP_002263439.1 1503512..1503805(+) (comYE) [Streptococcus mutans strain NCH105]
MVSIKKQKVKAYILLESLVALGLFVTITTLILTQLSHYQERTAKNLQKQEILNLAIMALQTQQDHLSFNGVSVTVVKNQG
ETIVYHDHEEVINLVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=388857 F5989_RS07455 WP_002263439.1 1503512..1503805(+) (comYE) [Streptococcus mutans strain NCH105]
GTGGTCAGTATAAAAAAACAGAAAGTTAAAGCTTATATTCTTCTAGAAAGTTTAGTTGCTTTGGGACTTTTCGTAACCAT
CACAACTTTAATTCTTACTCAGTTGAGTCATTATCAGGAAAGAACAGCTAAAAATTTACAAAAACAAGAAATATTGAATT
TAGCAATAATGGCTCTTCAAACTCAGCAAGATCATTTAAGCTTCAACGGCGTCAGTGTTACGGTTGTTAAAAATCAAGGG
GAAACTATAGTTTATCATGATCATGAGGAGGTTATCAATCTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

100

100

1
  comYE Streptococcus mutans UA159

100

100

1
  comGE/cglE Streptococcus pneumoniae Rx1

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae D39

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae R6

44.444

92.784

0.412
  comGE/cglE Streptococcus pneumoniae TIGR4

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis NCTC 12261

44.444

92.784

0.412
  comGE/cglE Streptococcus mitis SK321

44.444

92.784

0.412

Multiple sequence alignment