Detailed information NTG0388488

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: F4V26_RS02005
• Genome accession: NZ_CP044169
• Coordinates: 366642..367823 (+)
• Length: 393 a.a.
• NCBI ID: WP_002868229.1
• Uniprot ID: A0AB36G5F3
• Organism: Campylobacter jejuni strain AR-0414
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 361642..372823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V26_RS01980	ctsR	362204..362515 (+)	312	WP_002855438.1	hypothetical protein	Machinery gene
F4V26_RS01985	ctsD	362493..363905 (+)	1413	WP_002856543.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V26_RS01990	ctsP	363898..364505 (+)	608	Protein_374	ATP-binding protein	-
F4V26_RS01995	ctsX	364509..365096 (+)	588	WP_002851370.1	membrane protein	Machinery gene
F4V26_RS02000	ctsE	365086..366645 (+)	1560	WP_032600597.1	GspE/PulE family protein	Machinery gene
F4V26_RS02005	ctsF	366642..367823 (+)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
F4V26_RS02010	-	367816..368580 (-)	765	WP_002855821.1	TSUP family transporter	-
F4V26_RS02015	-	368584..369348 (-)	765	WP_002851318.1	TIGR02757 family protein	-
F4V26_RS02020	flgK	369365..371191 (-)	1827	WP_002876047.1	flagellar hook-associated protein FlgK	-
F4V26_RS02025	-	371201..371635 (-)	435	WP_002876049.1	flagellar protein FlgN	-
F4V26_RS02030	flgM	371677..371874 (-)	198	WP_002792053.1	flagellar biosynthesis anti-sigma factor FlgM	-
F4V26_RS02035	-	371937..372278 (-)	342	WP_002869194.1	hypothetical protein	-

Sequence

Protein

• Length: 393 a.a.
• Molecular weight: 45730.33 Da
• Isoelectric Point: 9.0938

>NTDB_id=388488 F4V26_RS02005 WP_002868229.1 366642..367823(+) (ctsF) [Campylobacter jejuni strain AR-0414]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide

• Length: 1182 bp

>NTDB_id=388488 F4V26_RS02005 WP_002868229.1 366642..367823(+) (ctsF) [Campylobacter jejuni strain AR-0414]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (261-382)

• Type II secretion system (T2SS), protein F (T2SSF) (60-179)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	98.98	99.746	0.987