Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   F4V26_RS01980 Genome accession   NZ_CP044169
Coordinates   362204..362515 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain AR-0414     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357204..367515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS01970 - 357887..358528 (+) 642 WP_002858866.1 HAD family hydrolase -
  F4V26_RS01975 nifJ 358620..362180 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  F4V26_RS01980 ctsR 362204..362515 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  F4V26_RS01985 ctsD 362493..363905 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  F4V26_RS01990 ctsP 363898..364505 (+) 608 Protein_374 ATP-binding protein -
  F4V26_RS01995 ctsX 364509..365096 (+) 588 WP_002851370.1 membrane protein Machinery gene
  F4V26_RS02000 ctsE 365086..366645 (+) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=388484 F4V26_RS01980 WP_002855438.1 362204..362515(+) (ctsR) [Campylobacter jejuni strain AR-0414]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=388484 F4V26_RS01980 WP_002855438.1 362204..362515(+) (ctsR) [Campylobacter jejuni strain AR-0414]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment