Detailed information NTG0388485

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: F4V26_RS01985
• Genome accession: NZ_CP044169
• Coordinates: 362493..363905 (+)
• Length: 470 a.a.
• NCBI ID: WP_002856543.1
• Uniprot ID: A0A2R4CZP6
• Organism: Campylobacter jejuni strain AR-0414
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 357493..368905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F4V26_RS01970	-	357887..358528 (+)	642	WP_002858866.1	HAD family hydrolase	-
F4V26_RS01975	nifJ	358620..362180 (+)	3561	WP_002851382.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
F4V26_RS01980	ctsR	362204..362515 (+)	312	WP_002855438.1	hypothetical protein	Machinery gene
F4V26_RS01985	ctsD	362493..363905 (+)	1413	WP_002856543.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F4V26_RS01990	ctsP	363898..364505 (+)	608	Protein_374	ATP-binding protein	-
F4V26_RS01995	ctsX	364509..365096 (+)	588	WP_002851370.1	membrane protein	Machinery gene
F4V26_RS02000	ctsE	365086..366645 (+)	1560	WP_032600597.1	GspE/PulE family protein	Machinery gene
F4V26_RS02005	ctsF	366642..367823 (+)	1182	WP_002868229.1	type II secretion system F family protein	Machinery gene
F4V26_RS02010	-	367816..368580 (-)	765	WP_002855821.1	TSUP family transporter	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53094.65 Da
• Isoelectric Point: 6.6184

>NTDB_id=388485 F4V26_RS01985 WP_002856543.1 362493..363905(+) (ctsD) [Campylobacter jejuni strain AR-0414]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=388485 F4V26_RS01985 WP_002856543.1 362493..363905(+) (ctsD) [Campylobacter jejuni strain AR-0414]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAGGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACTGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

3D structure

• AlphaFold DB: A0A2R4CZP6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	100	100	1