Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AXYL_RS27585 Genome accession   NC_014640
Coordinates   5967507..5968583 (-) Length   358 a.a.
NCBI ID   WP_049797867.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans A8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5962507..5973583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXYL_RS27580 (AXYL_05571) - 5965770..5967428 (+) 1659 WP_013396172.1 CYTH and CHAD domain-containing protein -
  AXYL_RS27585 (AXYL_05572) pilA 5967507..5968583 (-) 1077 WP_049797867.1 signal recognition particle-docking protein FtsY Machinery gene
  AXYL_RS27590 (AXYL_05573) rsmD 5968927..5969493 (+) 567 WP_041654349.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AXYL_RS27595 (AXYL_05574) coaD 5969552..5970055 (+) 504 WP_013396175.1 pantetheine-phosphate adenylyltransferase -
  AXYL_RS27600 (AXYL_05575) - 5970182..5970433 (+) 252 WP_006385941.1 YfhL family 4Fe-4S dicluster ferredoxin -
  AXYL_RS27605 (AXYL_05576) - 5970430..5971653 (+) 1224 WP_013396176.1 benzoate/H(+) symporter BenE family transporter -
  AXYL_RS27610 (AXYL_05577) - 5971680..5972066 (-) 387 WP_013396177.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 36993.73 Da        Isoelectric Point: 8.5379

>NTDB_id=38832 AXYL_RS27585 WP_049797867.1 5967507..5968583(-) (pilA) [Achromobacter xylosoxidans A8]
MPTPAPAPAAAPAPVAVSAPAVATPAPISVPAPVAAPPAVPAPAPAPEPVAEAPKKASWLSRLKQGLSRTGQSIGGIFVG
VKVDENLFEELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERAFDLKRTQPLVVMIAG
VNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQDGGDPAAVAFDAVNAGRARGMGVVMV
DTAGRLPTQLHLMEELKKIRRVIGKADAAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVA
AGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=38832 AXYL_RS27585 WP_049797867.1 5967507..5968583(-) (pilA) [Achromobacter xylosoxidans A8]
GTGCCGACGCCAGCGCCTGCCCCGGCGGCGGCTCCCGCACCTGTCGCGGTTTCCGCGCCAGCGGTAGCAACGCCGGCGCC
GATCTCCGTGCCCGCTCCCGTTGCGGCTCCACCGGCCGTACCGGCTCCCGCGCCTGCTCCCGAACCCGTCGCTGAAGCTC
CCAAGAAGGCCTCGTGGCTGTCCCGCTTGAAGCAGGGCCTGTCGCGCACGGGCCAGAGCATCGGCGGCATCTTCGTCGGC
GTGAAGGTCGACGAGAACCTCTTCGAGGAACTCGAGTCGGCGCTCATTATGGCCGATGCGGGTCTGGAGGCCACCGAAAA
GCTCCTGACCGCGCTGCGCGCCCGGGTCAAGAAGGAACGCATCGAGGACCCGGCCAAGGTGAAGACGGCCCTGCGACAGC
TGCTGGCCGACCACCTGCGTCCGCTGGAGCGCGCCTTCGACCTGAAGCGCACGCAGCCCCTGGTTGTCATGATCGCCGGC
GTCAATGGCGCCGGCAAGACCACTTCCATCGGCAAGCTGGCCCACACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGC
TGCCGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAGCTCATCGAATGGGGCAGCCGCAACAACGTGACGGTGATCTCGC
AGGACGGCGGCGATCCGGCGGCGGTGGCGTTCGACGCCGTCAACGCGGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTC
GATACCGCAGGCCGCCTGCCCACGCAGTTGCACCTGATGGAAGAGTTGAAGAAGATCCGCCGCGTGATCGGCAAGGCGGA
TGCCGCCGCGCCGCACGAGGTGCTGCTGGTGGTGGACGGCAACACTGGCCAGAACGCCTTGGCGCAGATCCGCGCTTTCG
ACGCCGCCATCAATCTGACGGGCCTGGTCGTGACCAAGCTGGATGGCACCGCCAAGGGCGGTACGCTGGCCGCCGTGGCC
GCGGGCAGCCAGGGCGTGCGCCCGATCCCGGTGTATTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTCGT
GGCGGACGAGTTCGCCGGGGCCTTGCTGGCGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(72-133)

SRP54-type protein, GTPase domain (SRP54)

(154-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.497

85.475

0.5

Multiple sequence alignment