Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   F3129_RS12180 Genome accession   NZ_CP044133
Coordinates   2519460..2519795 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2514460..2524795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS12160 (F3129_12160) gcvT 2515066..2516166 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  F3129_RS12165 (F3129_12165) - 2516590..2518260 (+) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  F3129_RS12170 (F3129_12170) - 2518282..2519076 (+) 795 WP_014418368.1 YqhG family protein -
  F3129_RS12175 (F3129_12175) sinI 2519253..2519426 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  F3129_RS12180 (F3129_12180) sinR 2519460..2519795 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  F3129_RS12185 (F3129_12185) tasA 2519843..2520628 (-) 786 WP_150941309.1 biofilm matrix protein TasA -
  F3129_RS12190 (F3129_12190) sipW 2520693..2521277 (-) 585 WP_015240205.1 signal peptidase I SipW -
  F3129_RS12195 (F3129_12195) tapA 2521249..2521920 (-) 672 WP_150941310.1 amyloid fiber anchoring/assembly protein TapA -
  F3129_RS12200 (F3129_12200) - 2522179..2522508 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  F3129_RS12205 (F3129_12205) - 2522548..2522727 (-) 180 WP_003153093.1 YqzE family protein -
  F3129_RS12210 (F3129_12210) comGG 2522784..2523161 (-) 378 WP_150941311.1 competence type IV pilus minor pilin ComGG Machinery gene
  F3129_RS12215 (F3129_12215) comGF 2523162..2523662 (-) 501 WP_256994853.1 competence type IV pilus minor pilin ComGF -
  F3129_RS12220 (F3129_12220) comGE 2523571..2523885 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  F3129_RS12225 (F3129_12225) comGD 2523869..2524306 (-) 438 WP_015240210.1 competence type IV pilus minor pilin ComGD Machinery gene
  F3129_RS12230 (F3129_12230) comGC 2524296..2524604 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=388175 F3129_RS12180 WP_003153104.1 2519460..2519795(+) (sinR) [Bacillus velezensis strain FJAT-46737]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=388175 F3129_RS12180 WP_003153104.1 2519460..2519795(+) (sinR) [Bacillus velezensis strain FJAT-46737]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment