Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   F5K02_RS16150 Genome accession   NZ_CP044132
Coordinates   3252740..3253384 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247740..3258384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS16115 (F5K02_16215) - 3248925..3249356 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  F5K02_RS16120 (F5K02_16220) - 3249356..3249697 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  F5K02_RS16125 (F5K02_16225) - 3249690..3251171 (+) 1482 WP_042635451.1 Na+/H+ antiporter subunit D -
  F5K02_RS16130 (F5K02_16230) - 3251177..3251653 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  F5K02_RS16135 (F5K02_16235) - 3251653..3251937 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  F5K02_RS16140 (F5K02_16240) mnhG 3251921..3252295 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  F5K02_RS16145 (F5K02_16245) - 3252335..3252718 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  F5K02_RS16150 (F5K02_16250) comA 3252740..3253384 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  F5K02_RS16155 (F5K02_16255) comP 3253465..3255771 (-) 2307 WP_094032817.1 sensor histidine kinase Regulator
  F5K02_RS16160 (F5K02_16260) comX 3255790..3255966 (-) 177 WP_015240484.1 competence pheromone ComX -
  F5K02_RS16165 (F5K02_16265) - 3255981..3256856 (-) 876 WP_025285191.1 polyprenyl synthetase family protein -
  F5K02_RS16170 (F5K02_16270) degQ 3257008..3257148 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  F5K02_RS16175 (F5K02_16280) - 3257611..3257952 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=388118 F5K02_RS16150 WP_003152052.1 3252740..3253384(-) (comA) [Bacillus amyloliquefaciens strain ZKY01]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=388118 F5K02_RS16150 WP_003152052.1 3252740..3253384(-) (comA) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment