Detailed information NTG0388070

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: F5K02_RS02025
• Genome accession: NZ_CP044132
• Coordinates: 432289..433437 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZKY01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 427289..438437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F5K02_RS02005 (F5K02_02005)	-	427689..428372 (-)	684	WP_094032071.1	ABC transporter ATP-binding protein	-
F5K02_RS02010 (F5K02_02010)	-	428387..429823 (-)	1437	WP_094032072.1	ABC transporter permease	-
F5K02_RS02015 (F5K02_02015)	-	430036..430719 (+)	684	WP_007410267.1	response regulator transcription factor	-
F5K02_RS02020 (F5K02_02020)	-	430706..432127 (+)	1422	WP_195182934.1	HAMP domain-containing sensor histidine kinase	-
F5K02_RS02025 (F5K02_02025)	rapC	432289..433437 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
F5K02_RS02030 (F5K02_02030)	phrC	433421..433540 (+)	120	WP_064115825.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
F5K02_RS02035 (F5K02_02035)	-	433689..433784 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
F5K02_RS02040 (F5K02_02040)	-	433879..435243 (-)	1365	WP_241457887.1	aspartate kinase	-
F5K02_RS02045 (F5K02_02045)	ceuB	435657..436610 (+)	954	WP_015239156.1	ABC transporter permease	Machinery gene
F5K02_RS02050 (F5K02_02050)	-	436600..437547 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
F5K02_RS02055 (F5K02_02055)	-	437541..438299 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=388070 F5K02_RS02025 WP_007410270.1 432289..433437(+) (rapC) [Bacillus amyloliquefaciens strain ZKY01]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=388070 F5K02_RS02025 WP_007410270.1 432289..433437(+) (rapC) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568