Detailed information NTG0388071

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ30_RS05075
• Genome accession: NZ_CP051765
• Coordinates: 1059253..1060245 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-113
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1054253..1065245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ30_RS05045 (HHJ30_05045)	ispD	1054314..1055024 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ30_RS05050 (HHJ30_05050)	ispF	1055024..1055503 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ30_RS05055 (HHJ30_05055)	truD	1055500..1056549 (+)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
HHJ30_RS05060 (HHJ30_05060)	surE	1056530..1057291 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ30_RS05065 (HHJ30_05065)	pcm	1057285..1057911 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ30_RS05070 (HHJ30_05070)	nlpD	1058096..1059190 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ30_RS05075 (HHJ30_05075)	rpoS	1059253..1060245 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ30_RS05080 (HHJ30_05080)	ygbN	1060340..1061704 (-)	1365	WP_000104429.1	GntP family transporter	-
HHJ30_RS05085 (HHJ30_05085)	ygbM	1061793..1062569 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HHJ30_RS05090 (HHJ30_05090)	ygbL	1062574..1063212 (-)	639	WP_001278994.1	aldolase	-
HHJ30_RS05095 (HHJ30_05095)	otnK	1063209..1064471 (-)	1263	WP_000590385.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=388071 HHJ30_RS05075 WP_000081550.1 1059253..1060245(+) (rpoS) [Escherichia coli strain SCU-113]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=388071 HHJ30_RS05075 WP_000081550.1 1059253..1060245(+) (rpoS) [Escherichia coli strain SCU-113]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATTCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715