Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   BATR1942_RS13160 Genome accession   NC_014639
Coordinates   2689454..2689597 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2684454..2694597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS13135 (BATR1942_13685) - 2684736..2685116 (-) 381 WP_003327155.1 hotdog fold thioesterase -
  BATR1942_RS13140 (BATR1942_13690) comA 2685134..2685775 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  BATR1942_RS13145 (BATR1942_13695) comP 2685857..2688166 (-) 2310 WP_003327153.1 histidine kinase Regulator
  BATR1942_RS13150 (BATR1942_13700) comX 2688182..2688403 (-) 222 WP_003327152.1 competence pheromone ComX -
  BATR1942_RS13155 (BATR1942_13705) - 2688400..2689269 (-) 870 WP_003327151.1 polyprenyl synthetase family protein -
  BATR1942_RS13160 (BATR1942_13710) degQ 2689454..2689597 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  BATR1942_RS13165 (BATR1942_13715) - 2690057..2690416 (+) 360 WP_003327148.1 hypothetical protein -
  BATR1942_RS13170 (BATR1942_13720) - 2690435..2691667 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  BATR1942_RS13175 (BATR1942_13725) - 2691805..2693271 (-) 1467 WP_087941835.1 nicotinate phosphoribosyltransferase -
  BATR1942_RS13180 (BATR1942_13730) - 2693287..2693838 (-) 552 WP_003327145.1 cysteine hydrolase family protein -
  BATR1942_RS13185 (BATR1942_13735) - 2693946..2694344 (-) 399 WP_003327144.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=38795 BATR1942_RS13160 WP_003327149.1 2689454..2689597(-) (degQ) [Bacillus atrophaeus 1942]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=38795 BATR1942_RS13160 WP_003327149.1 2689454..2689597(-) (degQ) [Bacillus atrophaeus 1942]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894

Multiple sequence alignment