Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BATR1942_RS13140 Genome accession   NC_014639
Coordinates   2685134..2685775 (-) Length   213 a.a.
NCBI ID   WP_003327154.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2680134..2690775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS13105 (BATR1942_13655) - 2681327..2681758 (+) 432 WP_003327161.1 Na(+)/H(+) antiporter subunit B -
  BATR1942_RS13110 (BATR1942_13660) - 2681758..2682099 (+) 342 WP_003327160.1 Na(+)/H(+) antiporter subunit C -
  BATR1942_RS13115 (BATR1942_13665) - 2682092..2683573 (+) 1482 WP_003327159.1 Na+/H+ antiporter subunit D -
  BATR1942_RS13120 (BATR1942_13670) - 2683579..2684055 (+) 477 WP_003327158.1 Na+/H+ antiporter subunit E -
  BATR1942_RS13125 (BATR1942_13675) - 2684055..2684339 (+) 285 WP_003327157.1 Na(+)/H(+) antiporter subunit F1 -
  BATR1942_RS13130 (BATR1942_13680) mnhG 2684323..2684697 (+) 375 WP_003327156.1 monovalent cation/H(+) antiporter subunit G -
  BATR1942_RS13135 (BATR1942_13685) - 2684736..2685116 (-) 381 WP_003327155.1 hotdog fold thioesterase -
  BATR1942_RS13140 (BATR1942_13690) comA 2685134..2685775 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  BATR1942_RS13145 (BATR1942_13695) comP 2685857..2688166 (-) 2310 WP_003327153.1 histidine kinase Regulator
  BATR1942_RS13150 (BATR1942_13700) comX 2688182..2688403 (-) 222 WP_003327152.1 competence pheromone ComX -
  BATR1942_RS13155 (BATR1942_13705) - 2688400..2689269 (-) 870 WP_003327151.1 polyprenyl synthetase family protein -
  BATR1942_RS13160 (BATR1942_13710) degQ 2689454..2689597 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  BATR1942_RS13165 (BATR1942_13715) - 2690057..2690416 (+) 360 WP_003327148.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23944.30 Da        Isoelectric Point: 4.7742

>NTDB_id=38793 BATR1942_RS13140 WP_003327154.1 2685134..2685775(-) (comA) [Bacillus atrophaeus 1942]
MKKILVIDDHPAVMEGTKTILETDANLSVDCLSPDASEHFVHNHDFAAYDLILMDLNLGEINGMELSKKILKENPLCKII
VYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNDEILVDFSYFKQLVTHQKTKPAAASQNDQDVLTPRECLI
LQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=38793 BATR1942_RS13140 WP_003327154.1 2685134..2685775(-) (comA) [Bacillus atrophaeus 1942]
ATGAAAAAGATACTTGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTCTGGAAACAGATGCAAATCT
TTCTGTCGATTGTCTCAGTCCTGATGCCAGTGAACATTTTGTTCATAATCATGATTTTGCGGCTTATGATCTCATCTTAA
TGGATTTAAATCTAGGTGAAATCAACGGGATGGAGCTTTCTAAAAAGATTTTAAAAGAGAATCCTCTCTGCAAAATTATT
GTTTATACCGGCTATGAAGTGGAGGATTATTTTGAGGAGGCCATTCGTGCAGGGCTGCACGGCGCGATCAGCAAGACCGA
ATCAAAAGAAAAGATTACGCAATACATATATCATGTGCTCAATGATGAAATTTTAGTTGATTTTTCTTATTTTAAACAGT
TGGTCACTCATCAAAAAACAAAACCTGCTGCCGCTTCGCAAAATGATCAAGATGTTCTGACGCCAAGAGAATGTCTCATT
CTTCAAGAGGTAGAAAAGGGATTTACCAATCAGGAAATAGCTGACGCGCTCCATCTGAGTAAGCGTTCGATTGAATACAG
CCTGACGTCCATTTTCAACAAACTGAACGTCGGTTCCCGGACGGAAGCGGTACTGATCGCAAAATCGGATGGCGTACTTT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

89.72

100

0.901

Multiple sequence alignment