Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FOB62_RS03255 Genome accession   NZ_CP044102
Coordinates   649572..651074 (-) Length   500 a.a.
NCBI ID   WP_014612022.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 644572..656074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS03235 (FOB62_03235) - 645637..646623 (+) 987 WP_138127969.1 IS30-like element IS1239 family transposase -
  FOB62_RS03240 (FOB62_03240) amiF 646651..647574 (-) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator
  FOB62_RS03245 (FOB62_03245) amiE 647567..648637 (-) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  FOB62_RS03250 (FOB62_03250) amiD 648646..649572 (-) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  FOB62_RS03255 (FOB62_03255) amiC 649572..651074 (-) 1503 WP_014612022.1 ABC transporter permease Regulator
  FOB62_RS03260 (FOB62_03260) amiA 651140..653110 (-) 1971 WP_014612021.1 peptide ABC transporter substrate-binding protein Regulator
  FOB62_RS03265 (FOB62_03265) pbp3 653441..654679 (+) 1239 WP_150336172.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FOB62_RS03270 (FOB62_03270) - 654848..655816 (-) 969 WP_150336173.1 IS30 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55956.34 Da        Isoelectric Point: 10.2619

>NTDB_id=387861 FOB62_RS03255 WP_014612022.1 649572..651074(-) (amiC) [Streptococcus dysgalactiae strain FDAARGOS_654]
MKKYILNRILRSLVSVVLVTALTYTIVYTLVPVGLIFKQDPNYNKMTTTPDKKAAYESLTFQRMGYINYFSSKELKDNAS
KIDSSVTTEATSANKVIYEKYIHSLGNGWQLKRFPVSKKFYATRKIPIYERVWNFFSNLVVIDHPWKIQDKNNPNLARYV
RLENDKSIGWSLVGSGTQHKYLVYANGKFPYLHQNLVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDITFPSGVTKKSS
VDIYSRTYKNPKSMDDITKANYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVLIAYVIGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGSMVGLPDSFPMLGASSPKSYVLPALILGILSIPSTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRDHLFKNAMVPIVSGIPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIAMTIVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=387861 FOB62_RS03255 WP_014612022.1 649572..651074(-) (amiC) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGAAAAAATACATTTTAAACCGTATCTTACGATCGTTAGTATCGGTTGTTCTGGTAACGGCTTTAACATACACTATCGT
ATATACCCTCGTCCCTGTCGGTCTTATTTTTAAACAAGACCCTAACTACAATAAGATGACGACGACACCAGATAAAAAGG
CTGCTTATGAAAGCTTAACCTTCCAACGTATGGGGTATATTAATTACTTTTCAAGTAAAGAATTAAAAGATAATGCTTCT
AAAATAGATAGTAGTGTAACGACTGAAGCGACTAGTGCTAACAAGGTTATTTATGAGAAATATATTCATTCCCTCGGTAA
TGGCTGGCAGCTAAAACGTTTCCCGGTTAGCAAAAAATTCTATGCTACTCGTAAGATTCCTATTTACGAACGTGTTTGGA
ACTTCTTTTCAAACTTAGTTGTTATTGACCATCCTTGGAAAATTCAAGACAAGAATAACCCTAATCTAGCTAGATATGTT
CGCCTTGAAAATGATAAATCTATTGGCTGGTCACTTGTTGGATCGGGGACACAACACAAATACCTTGTTTATGCCAATGG
CAAGTTCCCTTACCTTCACCAAAACCTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGACAAGGGCGAACAGCTCTTCAAGATATTACTTTCCCATCAGGAGTGACTAAAAAATCATCA
GTGGATATTTACAGTCGTACTTATAAAAATCCAAAATCAATGGATGATATTACCAAAGCAAACTATGGTAAGGGCGATTC
ATATACTAAGACCATTAATAACTATGTTGACCCATCAATGATTCACAATTCCTTTGTTATTGGGTTCTTTGGTGTCCTAA
TTGCTTATGTTATTGGACTACCTCTCGGTCTATTTATGGCACGCTTTAAAAATACCTATTTTGATCGTTTTTCAACAGCA
ACCATGACCTTCATGCTTGCCTTACCAAGTATTGCCGTTATCTATGTTGTTCGCTTCCTAGGAAGTATGGTTGGCTTGCC
AGATAGTTTTCCTATGCTAGGAGCGTCTAGCCCTAAATCTTACGTATTACCAGCTCTTATTTTGGGAATTTTAAGTATCC
CAAGTACAGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCTAGTGATTGGGTACGGTTTGCTCGCTCAAAAGGG
TTATCAGAATCTGAAATTTATAGAGACCACCTTTTCAAAAATGCTATGGTTCCGATTGTCTCAGGTATTCCGGCAAGTAT
TATTCTTGCGATTGGTGGAGCGACATTAACAGAGACGGTTTTTGCCTTCCCAGGTATGGGGAAAATGTTGATTGATTCTA
TCAAATCAGCTAACAACTCAATGATTGTTGGGTTAACCTTTATTTTCACTGTCTTGTCAATTGTATCTCTACTGTTAGGA
GATATTGCTATGACAATTGTCGATCCACGTATTAAATTGTCAACTAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.8

100

0.598
  amiC Streptococcus thermophilus LMD-9

59.6

100

0.596
  amiC Streptococcus thermophilus LMG 18311

59.6

100

0.596

Multiple sequence alignment