Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBG2136_RS10005 Genome accession   NC_017513
Coordinates   1911669..1912133 (-) Length   154 a.a.
NCBI ID   WP_011799029.1    Uniprot ID   -
Organism   Neisseria meningitidis G2136     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1906669..1917133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS09970 (NMBG2136_1788) - 1906702..1907130 (+) 429 WP_002226027.1 CopD family protein -
  NMBG2136_RS09975 (NMBG2136_1789) - 1907142..1907618 (+) 477 WP_002226026.1 CYTH domain-containing protein -
  NMBG2136_RS09980 (NMBG2136_1790) - 1907968..1908456 (-) 489 WP_002226025.1 dihydrofolate reductase -
  NMBG2136_RS09985 (NMBG2136_1791) aroG 1908524..1909579 (-) 1056 WP_002226024.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  NMBG2136_RS14580 - 1909741..1909968 (-) 228 WP_153310284.1 hypothetical protein -
  NMBG2136_RS09990 (NMBG2136_1793) - 1910194..1910502 (+) 309 WP_017629289.1 membrane protein -
  NMBG2136_RS14995 (NMBG2136_1794) - 1910551..1910655 (-) 105 Protein_1851 IS1595 family transposase -
  NMBG2136_RS09995 (NMBG2136_1795) - 1910759..1910965 (-) 207 WP_002220254.1 hypothetical protein -
  NMBG2136_RS10000 (NMBG2136_1796) comP 1911132..1911581 (-) 450 WP_002221685.1 type IV pilin protein Machinery gene
  NMBG2136_RS10005 (NMBG2136_1797) comE 1911669..1912133 (-) 465 WP_011799029.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=38782 NMBG2136_RS10005 WP_011799029.1 1911669..1912133(-) (comE) [Neisseria meningitidis G2136]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=38782 NMBG2136_RS10005 WP_011799029.1 1911669..1912133(-) (comE) [Neisseria meningitidis G2136]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment