Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BATR1942_RS10530 Genome accession   NC_014639
Coordinates   2158035..2160368 (-) Length   777 a.a.
NCBI ID   WP_003325393.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2153035..2165368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS10500 (BATR1942_11070) - 2153366..2153704 (-) 339 WP_004429433.1 YqxA family protein -
  BATR1942_RS10505 (BATR1942_11075) spoIIP 2153723..2154931 (-) 1209 WP_013390604.1 stage II sporulation protein P -
  BATR1942_RS10510 (BATR1942_11080) gpr 2154998..2156101 (-) 1104 WP_003325397.1 GPR endopeptidase -
  BATR1942_RS10515 (BATR1942_11085) rpsT 2156306..2156572 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  BATR1942_RS10520 (BATR1942_11090) holA 2156587..2157630 (-) 1044 WP_003325395.1 DNA polymerase III subunit delta -
  BATR1942_RS21870 (BATR1942_11095) - 2157670..2157819 (-) 150 WP_010789254.1 hypothetical protein -
  BATR1942_RS20940 (BATR1942_11100) - 2157860..2157994 (+) 135 WP_003229983.1 YqzM family protein -
  BATR1942_RS10530 (BATR1942_11105) comEC 2158035..2160368 (-) 2334 WP_003325393.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BATR1942_RS10535 (BATR1942_11110) - 2160375..2160944 (-) 570 WP_003325392.1 ComE operon protein 2 -
  BATR1942_RS10540 (BATR1942_11115) comEA 2161012..2161635 (-) 624 WP_003325391.1 helix-hairpin-helix domain-containing protein Machinery gene
  BATR1942_RS10545 (BATR1942_11120) comER 2161719..2162540 (+) 822 WP_003325389.1 late competence protein ComER -
  BATR1942_RS10550 (BATR1942_11125) - 2162610..2163350 (-) 741 WP_003325388.1 class I SAM-dependent methyltransferase -
  BATR1942_RS10555 (BATR1942_11130) rsfS 2163347..2163703 (-) 357 WP_003325387.1 ribosome silencing factor -
  BATR1942_RS10560 (BATR1942_11135) yqeK 2163720..2164280 (-) 561 WP_003325386.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BATR1942_RS10565 (BATR1942_11140) - 2164270..2164839 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  BATR1942_RS10570 (BATR1942_11145) yhbY 2164851..2165141 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 86836.77 Da        Isoelectric Point: 8.7901

>NTDB_id=38781 BATR1942_RS10530 WP_003325393.1 2158035..2160368(-) (comEC) [Bacillus atrophaeus 1942]
MKNTRLLLPLAAASATAGIAAASFFSALLIFVLSLFFVYIKTKQLSLVFVSLSAFTIYFFLTSVIDSHNVSSYDIGSYKL
RAVIQEIPKIDGDRMSMVVRTPDGEKWASSYKIESLAEKEKLSQIEPGTACTFTGSLKKPKNATVPGTFDYKQYLYSQHI
HWNYSITAIQNCSTADGIQYRLLSVRKSLISFVNDHVPESSAGIVQALILGDRFYLMDDVLEAYQKLGVVHLLAISGLHV
GIVTAGIFYVLIRIGVTREKVAILLLLFLPVYTILTGAAPSVMRAALMSGLYFIGSLWGKRMNPSIVICLSYLILLLFNP
YHLFQIGFQLSFAVSFSLILSSSIFKKLQSGGLVQLAMVSLIAQLGSLPILIYYFQQFSLISIPMNIIMVPFYTMFVMPF
SMIGFLLLSLSEPVGECLFYWFDYIMCWSDKLIKYAADIEQFTVIAARPNALVLFGLIGSIVVLLTAMEKSALYQRLLSV
LLFIAMLFLVVIFPRLDPEGEVDMLDIGQGDSMFISAPYQRGHVMIDTGGILSYLTEPWREKRHPFSLSEKVLIPFLTAK
GIKQLDALILTHADQDHIGEAKVLIKRHKVKQLIVPKGFVSEPNDEKVLRTAQQEGIRITEVKRGDTFQIKDLQFLVLSP
ETPDPNSKNNSSLVLWMKTGHLSWVLTGDLEKEGEQEIMKAFPDLKADILKAGHHGSKGSTGEEFVRQLKPKAAIISAGE
NNRYHHPHQEVLDILKAHSVRIFRTDQSGTIQYRFKSGFGTFSVYPPYDTTGMTETN

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=38781 BATR1942_RS10530 WP_003325393.1 2158035..2160368(-) (comEC) [Bacillus atrophaeus 1942]
ATGAAGAACACACGCCTTCTTTTGCCTCTGGCGGCAGCATCAGCAACGGCTGGCATAGCTGCTGCCTCCTTTTTCTCCGC
ACTTCTCATATTCGTTTTATCACTCTTCTTTGTTTATATCAAAACAAAACAGCTCTCACTCGTTTTTGTTAGTTTATCGG
CTTTTACGATCTATTTTTTCTTAACCTCTGTTATCGATTCTCATAATGTATCGTCCTATGACATCGGCTCCTATAAGCTT
CGGGCGGTGATTCAGGAAATTCCAAAGATTGACGGCGACCGTATGTCCATGGTAGTTCGAACGCCGGATGGGGAAAAGTG
GGCTTCATCATATAAAATAGAGTCGCTTGCTGAAAAGGAAAAACTTTCACAGATAGAGCCAGGGACGGCTTGTACGTTTA
CCGGTTCTTTAAAAAAACCGAAAAACGCAACGGTTCCCGGCACTTTCGATTATAAACAGTATCTGTACAGCCAGCATATT
CACTGGAATTACTCGATAACAGCAATCCAAAATTGCAGCACGGCAGATGGAATACAGTATAGGCTTTTAAGCGTGAGAAA
GTCTCTTATTTCATTTGTGAATGACCATGTTCCGGAATCCTCAGCAGGCATCGTGCAGGCGCTCATCCTGGGTGACAGAT
TTTATCTTATGGACGATGTGCTGGAAGCGTATCAAAAGCTCGGAGTTGTCCATCTGCTTGCGATTTCAGGGCTTCATGTA
GGTATTGTGACGGCTGGTATATTCTATGTGCTCATTCGAATTGGGGTAACGAGAGAGAAGGTTGCCATTCTGCTGCTGTT
GTTTTTGCCTGTTTATACGATTTTAACCGGAGCGGCTCCGTCTGTGATGCGCGCAGCTCTTATGTCAGGGCTTTATTTTA
TCGGCAGTTTGTGGGGAAAGCGTATGAACCCTTCAATAGTGATCTGTCTTTCTTATTTAATTCTCCTTTTGTTTAATCCG
TATCATCTTTTTCAAATAGGGTTTCAGCTCTCATTTGCCGTAAGTTTCTCTTTAATACTTTCTTCCTCTATTTTTAAAAA
ACTTCAAAGCGGGGGACTCGTGCAGCTCGCCATGGTGTCACTCATCGCTCAGCTTGGATCGCTTCCCATCCTTATCTATT
ATTTTCAGCAGTTTTCTCTTATCAGTATACCGATGAATATCATTATGGTGCCTTTTTATACGATGTTTGTCATGCCGTTT
TCTATGATAGGTTTTCTTTTGTTAAGTTTGTCTGAGCCGGTCGGTGAGTGCCTGTTTTATTGGTTTGATTACATCATGTG
CTGGAGTGACAAGCTGATAAAGTATGCTGCAGACATTGAGCAATTTACAGTGATTGCAGCCCGTCCAAATGCGCTTGTCT
TGTTTGGGCTGATTGGATCTATCGTTGTTTTGCTGACAGCCATGGAAAAATCCGCCCTTTACCAAAGACTTCTGTCTGTG
CTGCTCTTTATCGCAATGCTTTTTCTGGTGGTTATTTTTCCTCGCCTGGACCCCGAGGGAGAAGTGGATATGCTTGATAT
CGGTCAGGGAGACAGCATGTTTATCAGCGCTCCGTATCAGCGCGGCCATGTGATGATAGACACTGGAGGAATCCTTTCAT
ACTTAACAGAGCCATGGAGGGAAAAACGGCATCCTTTTTCGCTTAGCGAAAAGGTGCTTATTCCTTTCTTAACAGCAAAA
GGCATTAAACAGCTTGATGCCTTAATTTTGACTCATGCAGACCAAGACCATATAGGGGAAGCAAAGGTTCTGATCAAGCG
GCATAAAGTCAAACAGCTCATTGTGCCGAAAGGATTTGTTTCTGAACCGAATGATGAAAAAGTGCTGCGGACCGCACAGC
AAGAGGGAATTCGCATTACAGAGGTTAAACGAGGCGACACCTTTCAGATAAAGGATTTACAGTTTCTCGTACTGTCGCCT
GAGACTCCCGACCCGAACAGCAAAAATAACTCTTCTCTCGTGCTATGGATGAAAACAGGTCATCTCAGCTGGGTGCTGAC
AGGCGATCTCGAAAAGGAAGGGGAACAGGAGATCATGAAAGCTTTTCCGGATCTAAAAGCGGATATTTTAAAGGCGGGGC
ATCATGGCAGTAAAGGATCTACCGGAGAAGAGTTTGTCCGCCAGCTGAAGCCAAAAGCGGCAATTATTTCTGCCGGTGAG
AATAATCGGTATCACCATCCCCATCAGGAAGTCCTTGATATATTAAAAGCTCATTCTGTCCGCATTTTCCGCACTGATCA
AAGCGGGACGATCCAATACAGATTTAAAAGCGGGTTTGGAACCTTTTCTGTCTATCCTCCATATGATACAACAGGTATGA
CGGAGACGAACTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-169)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)

Competence protein (Competence)

(208-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

65.508

100

0.655

Multiple sequence alignment