Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BATR1942_RS10120 Genome accession   NC_014639
Coordinates   2079856..2080926 (-) Length   356 a.a.
NCBI ID   WP_003325427.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2074856..2085926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS10075 (BATR1942_10635) tapA 2075391..2076092 (-) 702 WP_003325437.1 amyloid fiber anchoring/assembly protein TapA -
  BATR1942_RS10080 (BATR1942_10640) - 2076354..2076677 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  BATR1942_RS10085 (BATR1942_10645) - 2076724..2076903 (-) 180 WP_003325435.1 YqzE family protein -
  BATR1942_RS10090 (BATR1942_10650) comGG 2076973..2077347 (-) 375 WP_003325434.1 competence type IV pilus minor pilin ComGG Machinery gene
  BATR1942_RS10095 (BATR1942_10655) comGF 2077348..2077743 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  BATR1942_RS10100 (BATR1942_10660) comGE 2077757..2078104 (-) 348 WP_003325432.1 competence type IV pilus minor pilin ComGE Machinery gene
  BATR1942_RS10105 (BATR1942_10665) comGD 2078088..2078528 (-) 441 WP_003325431.1 competence type IV pilus minor pilin ComGD Machinery gene
  BATR1942_RS10110 (BATR1942_10670) comGC 2078518..2078784 (-) 267 WP_047937532.1 competence type IV pilus major pilin ComGC Machinery gene
  BATR1942_RS10115 (BATR1942_10675) comGB 2078832..2079869 (-) 1038 WP_003325428.1 competence type IV pilus assembly protein ComGB Machinery gene
  BATR1942_RS10120 (BATR1942_10680) comGA 2079856..2080926 (-) 1071 WP_003325427.1 competence type IV pilus ATPase ComGA Machinery gene
  BATR1942_RS10125 (BATR1942_10685) - 2081343..2082296 (-) 954 WP_003325425.1 magnesium transporter CorA family protein -
  BATR1942_RS10130 (BATR1942_10690) - 2082418..2083766 (+) 1349 Protein_2092 hemolysin family protein -
  BATR1942_RS10135 (BATR1942_10695) - 2083833..2084684 (-) 852 WP_003325423.1 STAS domain-containing protein -
  BATR1942_RS10145 (BATR1942_10700) - 2084943..2085323 (-) 381 WP_003325422.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BATR1942_RS10150 (BATR1942_10705) - 2085561..2085806 (+) 246 WP_003325421.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40499.88 Da        Isoelectric Point: 9.5686

>NTDB_id=38779 BATR1942_RS10120 WP_003325427.1 2079856..2080926(-) (comGA) [Bacillus atrophaeus 1942]
MDTIEKTSRTLIEEAYSVKASDIHIVPREQDALIHFRIDHALLKKRTMKKEECVRLISHFKFLSAMDIGERRKPQSGSLS
LKLKKGTVYLRMSTLPTINDESLVIRVLPQHNIPAIERLSLFPKTGATLLSFLKHSHGLIIFTGPTGSGKSTTLYSLVQY
AKKHFNRNIITLEDPVETRDQDVLQVQVNEKAGITYSAGLKAILRHDPDMIVLGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGVNMNEIEQTAIAIVAQRLVDLTCPFCEKGCSSVYCRITRDVRRATIYELLYGKNLQQCIQEARGE
RANYQYRTLRQIIRKGIALGYLTTNNYDRWVYHEED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=38779 BATR1942_RS10120 WP_003325427.1 2079856..2080926(-) (comGA) [Bacillus atrophaeus 1942]
TTGGATACGATAGAAAAAACTAGCAGAACATTAATTGAAGAGGCATATTCCGTGAAGGCCTCGGATATTCACATTGTACC
AAGGGAGCAAGATGCTTTGATCCATTTTCGGATTGACCATGCGTTGCTGAAGAAGCGGACAATGAAAAAGGAAGAGTGCG
TTCGGCTCATTTCCCATTTTAAATTTCTGTCAGCCATGGATATAGGAGAAAGGCGGAAGCCACAAAGTGGTTCACTTTCT
TTAAAGCTTAAAAAAGGGACAGTTTATCTCAGAATGTCGACACTTCCTACGATTAATGATGAAAGCCTCGTGATCAGAGT
TTTGCCTCAGCATAATATTCCTGCGATCGAAAGACTGTCCCTGTTCCCAAAGACAGGCGCCACGCTGCTATCCTTTTTAA
AGCACTCCCACGGCCTCATTATTTTTACCGGTCCGACTGGCTCAGGGAAATCTACCACCCTATATTCACTGGTTCAATAT
GCAAAAAAGCATTTCAACCGAAATATTATCACTCTCGAAGATCCTGTGGAAACAAGAGATCAGGATGTCTTGCAGGTACA
GGTGAATGAAAAAGCCGGCATTACGTACTCAGCGGGCCTGAAGGCGATTTTGCGCCATGATCCAGACATGATTGTTCTGG
GGGAAATCAGAGATGCTGAAACAGCAAAAATCGCCGTGCGGGCTGCTATGACAGGCCATTTGGTATTAACAAGCCTGCAC
ACAAGAGATGCCAAGGGCGCCATTTACAGACTGCTTGAATTCGGAGTAAATATGAATGAAATAGAGCAAACAGCGATTGC
GATAGTAGCCCAGCGATTAGTCGACTTAACCTGTCCATTTTGTGAAAAAGGCTGTTCCTCTGTTTATTGCCGGATTACAC
GTGATGTAAGGCGAGCGACCATTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATACAAGAAGCTAGAGGAGAA
CGGGCCAATTATCAGTACCGAACCTTACGGCAGATTATCAGAAAAGGAATCGCGCTTGGCTATCTAACGACGAATAATTA
CGACCGGTGGGTTTATCATGAAGAGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

87.36

100

0.874

Multiple sequence alignment