Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BATR1942_RS10060 Genome accession   NC_014639
Coordinates   2073462..2073797 (+) Length   111 a.a.
NCBI ID   WP_003325441.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2068462..2078797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS10040 (BATR1942_10600) gcvT 2069024..2070118 (-) 1095 WP_003325445.1 glycine cleavage system aminomethyltransferase GcvT -
  BATR1942_RS10045 (BATR1942_10605) - 2070579..2072249 (+) 1671 WP_003325444.1 DEAD/DEAH box helicase -
  BATR1942_RS10050 (BATR1942_10610) - 2072270..2073064 (+) 795 WP_003325443.1 YqhG family protein -
  BATR1942_RS10055 (BATR1942_10615) sinI 2073255..2073428 (+) 174 WP_003325442.1 anti-repressor SinI Regulator
  BATR1942_RS10060 (BATR1942_10620) sinR 2073462..2073797 (+) 336 WP_003325441.1 transcriptional regulator SinR Regulator
  BATR1942_RS10065 (BATR1942_10625) tasA 2073989..2074771 (-) 783 WP_003325439.1 biofilm matrix protein TasA -
  BATR1942_RS10070 (BATR1942_10630) sipW 2074835..2075407 (-) 573 WP_010789195.1 signal peptidase I SipW -
  BATR1942_RS10075 (BATR1942_10635) tapA 2075391..2076092 (-) 702 WP_003325437.1 amyloid fiber anchoring/assembly protein TapA -
  BATR1942_RS10080 (BATR1942_10640) - 2076354..2076677 (+) 324 WP_003325436.1 DUF3889 domain-containing protein -
  BATR1942_RS10085 (BATR1942_10645) - 2076724..2076903 (-) 180 WP_003325435.1 YqzE family protein -
  BATR1942_RS10090 (BATR1942_10650) comGG 2076973..2077347 (-) 375 WP_003325434.1 competence type IV pilus minor pilin ComGG Machinery gene
  BATR1942_RS10095 (BATR1942_10655) comGF 2077348..2077743 (-) 396 WP_309484978.1 competence type IV pilus minor pilin ComGF Machinery gene
  BATR1942_RS10100 (BATR1942_10660) comGE 2077757..2078104 (-) 348 WP_003325432.1 competence type IV pilus minor pilin ComGE Machinery gene
  BATR1942_RS10105 (BATR1942_10665) comGD 2078088..2078528 (-) 441 WP_003325431.1 competence type IV pilus minor pilin ComGD Machinery gene
  BATR1942_RS10110 (BATR1942_10670) comGC 2078518..2078784 (-) 267 WP_047937532.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12971.70 Da        Isoelectric Point: 9.2569

>NTDB_id=38772 BATR1942_RS10060 WP_003325441.1 2073462..2073797(+) (sinR) [Bacillus atrophaeus 1942]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=38772 BATR1942_RS10060 WP_003325441.1 2073462..2073797(+) (sinR) [Bacillus atrophaeus 1942]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAAACAAACCCCTCCATTCAATTTCTCAAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCTATGACATCCGGGGTTTCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

98.198

100

0.982

Multiple sequence alignment