Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BATR1942_RS09875 Genome accession   NC_014639
Coordinates   2041205..2042935 (-) Length   576 a.a.
NCBI ID   WP_003325482.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2036205..2047935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS09855 (BATR1942_10410) - 2036340..2037458 (+) 1119 WP_003325486.1 NADH-dependent flavin oxidoreductase -
  BATR1942_RS09860 (BATR1942_10415) - 2037624..2038481 (+) 858 WP_003325485.1 manganese catalase family protein -
  BATR1942_RS09865 (BATR1942_10420) spo0A 2038649..2039446 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  BATR1942_RS09870 (BATR1942_10425) spoIVB 2039730..2041010 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  BATR1942_RS09875 (BATR1942_10430) recN 2041205..2042935 (-) 1731 WP_003325482.1 DNA repair protein RecN Machinery gene
  BATR1942_RS09880 (BATR1942_10435) argR 2042970..2043419 (-) 450 WP_003325480.1 arginine repressor ArgR -
  BATR1942_RS09885 (BATR1942_10440) - 2043518..2044363 (-) 846 WP_003325479.1 TlyA family RNA methyltransferase -
  BATR1942_RS09890 (BATR1942_10445) dxs 2044360..2046261 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BATR1942_RS09895 (BATR1942_10450) - 2046469..2047359 (-) 891 WP_003325477.1 polyprenyl synthetase family protein -
  BATR1942_RS09900 (BATR1942_10455) - 2047349..2047603 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64490.24 Da        Isoelectric Point: 4.7139

>NTDB_id=38770 BATR1942_RS09875 WP_003325482.1 2041205..2042935(-) (recN) [Bacillus atrophaeus 1942]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSNGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDMVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=38770 BATR1942_RS09875 WP_003325482.1 2041205..2042935(-) (recN) [Bacillus atrophaeus 1942]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACGAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAACGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGCTGTTGGACAAGTTTGCCGGAGAAGAGGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGTTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCATCGGCTGGATTTAATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGAAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCTGACATCAATGAACCGCTGCAAAAACT
TTCAGAAAGTGTTTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATATGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATGGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTTGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCAGGATGATTGCCGGAGTCGAGGTGACCGATCTGACGAAACGG
CATGCGAAAGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.104

100

0.901

Multiple sequence alignment